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Aliases for CACNA1C-IT2 Gene

Subcategory (RNA class) for CACNA1C-IT2 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CACNA1C-IT2 Gene

  • CACNA1C Intronic Transcript 2 2 3 5
  • CACNA1C Intronic Transcript 2 (Non-Protein Coding) 2 3

External Ids for CACNA1C-IT2 Gene

Previous GeneCards Identifiers for CACNA1C-IT2 Gene

  • GC00U933916
  • GC12P002158

Summaries for CACNA1C-IT2 Gene

GeneCards Summary for CACNA1C-IT2 Gene

CACNA1C-IT2 (CACNA1C Intronic Transcript 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CACNA1C-IT2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1C-IT2 Gene

Genomics for CACNA1C-IT2 Gene

GeneHancer (GH) Regulatory Elements for CACNA1C-IT2 Gene

Promoters and enhancers for CACNA1C-IT2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J002049 Enhancer 0.4 ENCODE 600.7 +1.8 1779 1 USF1 KDM1A ZMYM3 CACNA1C-IT2 GC12M002062 CACNA1C
GH12J002051 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.8 5843 4.4 PRDM1 GLIS2 ZBTB8A ZNF300 ZNF600 PRDM10 ZIC2 ZSCAN4 ZEB2 POLR2A CACNA1C TULP3 ITFG2 LRTM2 CACNA1C-IT2 GC12M002062
GH12J002034 Enhancer 1.1 FANTOM5 ENCODE 0.4 -13.3 -13259 0.2 SP1 ELF3 CTCF ZNF687 YY1 KLF14 CREM RAD21 ZNF560 KAT8 CACNA1C-AS4 CACNA1C LRTM2 CACNA1C-IT2 CACNA1C-IT1
GH12J002057 Enhancer 0.8 ENCODE dbSUPER 0.4 +9.1 9058 0.2 CTCF ZNF24 RAD21 REST ZSCAN4 SCRT2 ZBTB44 ZBTB17 SMC3 ZNF654 CACNA1C-IT2 GC12M002062 CACNA1C
GH12J002016 Enhancer 1 Ensembl dbSUPER 0.3 -29.3 -29251 3.4 ZNF121 ZNF384 SP7 CREM MLLT1 EGR1 IKZF1 PKNOX1 IKZF2 ZEB2 CACNA1C-IT1 CACNA1C-AS4 ENSG00000203593 ENSG00000258092 DCP1B FOXM1 CACNA1C-IT2 CACNA1C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CACNA1C-IT2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CACNA1C-IT2 Gene

Genomic Locations for CACNA1C-IT2 Gene
chr12:2,048,352-2,049,463
(GRCh38/hg38)
Size:
1,112 bases
Orientation:
Plus strand
chr12:2,157,518-2,158,629
(GRCh37/hg19)
Size:
1,112 bases
Orientation:
Plus strand

Genomic View for CACNA1C-IT2 Gene

Genes around CACNA1C-IT2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-IT2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-IT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-IT2 Gene

Proteins for CACNA1C-IT2 Gene

Post-translational modifications for CACNA1C-IT2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-IT2 Gene

Domains & Families for CACNA1C-IT2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1C-IT2 Gene

Function for CACNA1C-IT2 Gene

Phenotypes From GWAS Catalog for CACNA1C-IT2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-IT2 Gene

Localization for CACNA1C-IT2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-IT2 Gene

Pathways & Interactions for CACNA1C-IT2 Gene

PathCards logo

SuperPathways for CACNA1C-IT2 Gene

No Data Available

Interacting Proteins for CACNA1C-IT2 Gene

Gene Ontology (GO) - Biological Process for CACNA1C-IT2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA1C-IT2 Gene

Drugs & Compounds for CACNA1C-IT2 Gene

No Compound Related Data Available

Transcripts for CACNA1C-IT2 Gene

mRNA/cDNA for CACNA1C-IT2 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-IT2 Gene

No ASD Table

Relevant External Links for CACNA1C-IT2 Gene

GeneLoc Exon Structure for
CACNA1C-IT2
ECgene alternative splicing isoforms for
CACNA1C-IT2

Expression for CACNA1C-IT2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACNA1C-IT2 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1C-IT2 Gene

This gene is overexpressed in Heart - Atrial Appendage (x19.4) and Heart - Left Ventricle (x9.7).
genes like me logo Genes that share expression patterns with CACNA1C-IT2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-IT2 Gene

Orthologs for CACNA1C-IT2 Gene

Evolution for CACNA1C-IT2 Gene

ENSEMBL:
Gene Tree for CACNA1C-IT2 (if available)
TreeFam:
Gene Tree for CACNA1C-IT2 (if available)

No data available for Orthologs for CACNA1C-IT2 Gene

Paralogs for CACNA1C-IT2 Gene

No data available for Paralogs for CACNA1C-IT2 Gene

Variants for CACNA1C-IT2 Gene

Sequence variations from dbSNP and Humsavar for CACNA1C-IT2 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000893764 -- 2,047,514(+) C/G upstream_transcript_variant
rs1000944165 -- 2,047,826(+) C/T upstream_transcript_variant
rs1001683639 -- 2,048,677(+) A/G/T intron_variant
rs1001862696 -- 2,049,573(+) G/A downstream_transcript_variant
rs1002418777 -- 2,049,835(+) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-IT2 Gene

Variant ID Type Subtype PubMed ID
esv3580037 CNV loss 25503493
esv3580294 CNV gain 25503493
nsv1040370 CNV gain 25217958
nsv521838 CNV gain 19592680
nsv826182 CNV gain 20364138
nsv826183 CNV gain 20364138

Additional Variant Information for CACNA1C-IT2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-IT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1C-IT2 Gene

Disorders for CACNA1C-IT2 Gene

Additional Disease Information for CACNA1C-IT2

No disorders were found for CACNA1C-IT2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-IT2 Gene

Publications for CACNA1C-IT2 Gene

No publications were found for CACNA1C-IT2 Gene.

No data available for External Links for CACNA1C-IT2 Gene

Products for CACNA1C-IT2 Gene

Sources for CACNA1C-IT2 Gene

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