Aliases for CACNA1C-IT1 Gene

Subcategory (RNA class) for CACNA1C-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CACNA1C-IT1 Gene

  • CACNA1C Intronic Transcript 1 2 3 5
  • CACNA1C-IT1 2 5 165
  • CACNA1C Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG010182.2 91
  • HSALNG0088578 164

External Ids for CACNA1C-IT1 Gene

Additional External Ids for CACNA1C-IT1 Gene

Previous GeneCards Identifiers for CACNA1C-IT1 Gene

  • GC00U933066
  • GC12P002128

Summaries for CACNA1C-IT1 Gene

GeneCards Summary for CACNA1C-IT1 Gene

CACNA1C-IT1 (CACNA1C Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CACNA1C-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CACNA1C-IT1 Gene

Genomics for CACNA1C-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CACNA1C-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J002016 Enhancer 0.9 Ensembl dbSUPER 600.7 +1.3 1318 1.6 ZNF629 ZNF692 IKZF2 PKNOX1 EED ZNF639 DPF2 RELB EGR1 RUNX3 CACNA1C-IT1 ENSG00000203593 ENSG00000258092 DCP1B HSALNG0088576 CACNA1C FKBP4
GH12J002012 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.7 -2.8 -2815 3.1 GATAD2A TFE3 FOXA1 RXRB SP1 CEBPA SOX13 TCF7 TCF7L2 FOXA2 ENSG00000203593 TULP3 DCP1B CACNA1C-IT1 CACNA1C FKBP4
GH12J002034 Promoter/Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas 0.4 +18.3 18252 0.6 SP1 CTCF ZNF512 BACH1 LARP7 ZNF143 REST RAD21 IRF2 TRIM22 HSALNG0088576 CACNA1C-AS4 CACNA1C LRTM2 CACNA1C-IT1 DCP1B FKBP4
GH12J002009 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -7.1 -7083 1.2 CTCF ZNF629 PRDM1 ZIC2 SP1 OSR2 ESRRA ATF2 JUND NR2F1 ENSG00000203593 FKBP4 DCP1B CACNA1C-IT1 CACNA1C
GH12J002008 Enhancer 0.7 ENCODE dbSUPER 0.4 -7.8 -7793 0.2 SP1 CEBPB YY1 JUND JUNB HNF4A RXRA ATF3 FKBP4 ENSG00000203593 DCP1B CACNA1C-IT1 CACNA1C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CACNA1C-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CACNA1C-IT1 Gene

Genomic Locations for CACNA1C-IT1 Gene
chr12:2,016,683-2,034,227
(GRCh38/hg38)
Size:
17,545 bases
Orientation:
Plus strand
chr12:2,127,379-2,129,698
(GRCh37/hg19)
Size:
2,320 bases
Orientation:
Plus strand

Genomic View for CACNA1C-IT1 Gene

Genes around CACNA1C-IT1 on UCSC Golden Path with GeneCards custom track
CACNA1C-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CACNA1C-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-IT1 Gene

Proteins for CACNA1C-IT1 Gene

Post-translational modifications for CACNA1C-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-IT1 Gene

Domains & Families for CACNA1C-IT1 Gene

Gene Families for CACNA1C-IT1 Gene

genes like me logo Genes that share domains with CACNA1C-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CACNA1C-IT1 Gene

Function for CACNA1C-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-IT1 Gene

Localization for CACNA1C-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-IT1 Gene

Pathways & Interactions for CACNA1C-IT1 Gene

PathCards logo

SuperPathways for CACNA1C-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CACNA1C-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CACNA1C-IT1 Gene

Drugs & Compounds for CACNA1C-IT1 Gene

No Compound Related Data Available

Transcripts for CACNA1C-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CACNA1C-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003F26A1_9606 lncRNA 687 5

HGNC: 41312,

Ensembl: ENST00000646549 (view in UCSC) , ENST00000542984 (view in UCSC) ,

LncBook: HSALNT0184199,

LNCipedia: CACNA1C-IT1:1,

NONCODE: NONHSAT025442.2,

URS00009BAA54_9606 lncRNA 687 2

LncBook: HSALNT0184200,

NONCODE: NONHSAT161731.1,

CACNA1C-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-IT1 Gene

No ASD Table

Relevant External Links for CACNA1C-IT1 Gene

GeneLoc Exon Structure for
CACNA1C-IT1

No data available for mRNA/cDNA for CACNA1C-IT1 Gene

Expression for CACNA1C-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CACNA1C-IT1 Gene

genes like me logo Genes that share expression patterns with CACNA1C-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-IT1 Gene

Orthologs for CACNA1C-IT1 Gene

Evolution for CACNA1C-IT1 Gene

ENSEMBL:
Gene Tree for CACNA1C-IT1 (if available)
TreeFam:
Gene Tree for CACNA1C-IT1 (if available)

No data available for Orthologs for CACNA1C-IT1 Gene

Paralogs for CACNA1C-IT1 Gene

No data available for Paralogs for CACNA1C-IT1 Gene

Variants for CACNA1C-IT1 Gene

Additional dbSNP identifiers (rs#s) for CACNA1C-IT1 Gene

Additional Variant Information for CACNA1C-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CACNA1C-IT1 Gene

Disorders for CACNA1C-IT1 Gene

No disorders were found for CACNA1C-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CACNA1C-IT1 Gene

Publications for CACNA1C-IT1 Gene

No publications were found for CACNA1C-IT1 Gene.

No data available for Mastermind for CACNA1C-IT1 Gene

Products for CACNA1C-IT1 Gene

Sources for CACNA1C-IT1 Gene