Aliases for CACNA1C-IT1 Gene

Data sources for CACNA1C-IT1 Gene:

RNA type for CACNA1C-IT1 Gene

lncRNA

Aliases for CACNA1C-IT1 Gene

External Ids for CACNA1C-IT1 Gene

Previous GeneCards Identifiers for CACNA1C-IT1 Gene

  • GC00U933066
  • GC12P002128
  • GC12P002018

Summaries for CACNA1C-IT1 Gene

GeneCards Summary for CACNA1C-IT1 Gene

CACNA1C-IT1 (CACNA1C Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CACNA1C-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CACNA1C-IT1 Gene

Genomics for CACNA1C-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CACNA1C-IT1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CACNA1C-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CACNA1C-IT1 Gene

Latest Assembly
chr12:2,016,683-2,034,227
(GRCh38/hg38)
Size:
17,545 bases
Orientation:
Plus strand

Previous Assembly
chr12:2,127,379-2,129,698
(GRCh37/hg19 by Ensembl)
Size:
2,320 bases
Orientation:
Plus strand

Alternative Locations (GRCh38/hg38)

  • chr12(PATCHES):358,827-376,371 (+)

Genomic View for CACNA1C-IT1 Gene

Genes around CACNA1C-IT1 on UCSC Golden Path with GeneCards custom track
CACNA1C-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CACNA1C-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-IT1 Gene

Proteins for CACNA1C-IT1 Gene

Post-translational modifications for CACNA1C-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-IT1 Gene

Domains & Families for CACNA1C-IT1 Gene

Gene Families for CACNA1C-IT1 Gene

genes like me logo Genes that share domains with CACNA1C-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CACNA1C-IT1 Gene

Function for CACNA1C-IT1 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-IT1 Gene

Localization for CACNA1C-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-IT1 Gene

Pathways & Interactions for CACNA1C-IT1 Gene

PathCards logo

SuperPathways for CACNA1C-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CACNA1C-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CACNA1C-IT1 Gene

Drugs & Compounds for CACNA1C-IT1 Gene

No Compound Related Data Available

Transcripts for CACNA1C-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CACNA1C-IT1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003F26A1_9606 lncRNA 689 4

Ensembl: ENST00000542984 (view in UCSC) ,

LncBook: HSALNT0184199,

LNCipedia: CACNA1C-IT1:1,

NONCODE: NONHSAT025442.2,

URS00009BAA54_9606 lncRNA 687 2

LncBook: HSALNT0184200,

NONCODE: NONHSAT161731.1,

URS0001BD4011_9606 lncRNA 687 1

LncBook: HSALNT0184199,

URS0001BDCEA1_9606 lncRNA 687 1

LncBook: HSALNT0184200,

CACNA1C-IT1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-IT1 Gene

No ASD Table

Relevant External Links for CACNA1C-IT1 Gene

GeneLoc Exon Structure for
CACNA1C-IT1

No data available for mRNA/cDNA for CACNA1C-IT1 Gene

Expression for CACNA1C-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CACNA1C-IT1 Gene

genes like me logo Genes that share expression patterns with CACNA1C-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-IT1 Gene

Orthologs for CACNA1C-IT1 Gene

Evolution for CACNA1C-IT1 Gene

ENSEMBL:
Gene Tree for CACNA1C-IT1 (if available)
TreeFam:
Gene Tree for CACNA1C-IT1 (if available)
Alliance of Genome Resources:
Additional Orthologs for CACNA1C-IT1

No data available for Orthologs for CACNA1C-IT1 Gene

Paralogs for CACNA1C-IT1 Gene

No data available for Paralogs for CACNA1C-IT1 Gene

Variants for CACNA1C-IT1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CACNA1C-IT1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for CACNA1C-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-IT1
Leiden Open Variation Database (LOVD)
CACNA1C-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CACNA1C-IT1 Gene

Disorders for CACNA1C-IT1 Gene

No disorders were found for CACNA1C-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CACNA1C-IT1 Gene

Publications for CACNA1C-IT1 Gene

No publications were found for CACNA1C-IT1 Gene.

No data available for Mastermind for CACNA1C-IT1 Gene

Products for CACNA1C-IT1 Gene

Sources for CACNA1C-IT1 Gene