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CACNA1C-AS4 (CACNA1C Antisense RNA 4) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH12J002223 | Promoter | 0.3 | EPDnew | 600.7 | +0.0 | 14 | 0.1 | CACNA1C-AS4 ENSG00000278255 DCP1B CACNA1C FKBP4 | ||
GH12J002224 | Enhancer | 0.2 | dbSUPER | 600.7 | -1.1 | -1086 | 1 | CACNA1C-AS4 CACNA1C-IT3 lnc-DCP1B-6 DCP1B CACNA1C FKBP4 | ||
GH12J002222 | Enhancer | 0.2 | dbSUPER | 600.7 | +0.8 | 792 | 1.1 | CACNA1C-AS4 CACNA1C-IT3 ENSG00000278255 DCP1B CACNA1C FKBP4 | ||
GH12J002243 | Enhancer | 1.4 | Ensembl ENCODE CraniofacialAtlas dbSUPER | 12.7 | -24.4 | -24398 | 9.4 | HNRNPL GATAD2A TEAD4 ZNF629 TFE3 SOX13 NFKBIZ KDM1A RCOR2 FOXA1 | CACNA1C-AS4 ITFG2 DCP1B CACNA1C-IT3 CACNA1C lnc-DCP1B-6 lnc-DCP1B-9 FKBP4 | |
GH12J002263 | Enhancer | 1.5 | FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 11.5 | -43.3 | -43287 | 6.7 | TEAD4 SP1 CEBPA JUND CEBPB FOXA2 FOS YY1 ZBTB33 NR2F2 | lnc-DCP1B-9 CACNA1C-AS4 CACNA1C-IT3 CACNA1C DCP1B FKBP4 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS000075B9D4_9606 | lncRNA | 737 | 5 |
HGNC: 40116, RefSeq: NR_046578, LncBook: HSALNT0184220, LNCipedia: CACNA1C-AS4:1, NONCODE: NONHSAT025449.2, |
URS00005EB677_9606 | lncRNA | 735 | 3 |
Ensembl: ENST00000646962 (view in UCSC) , ENST00000544415 (view in UCSC) , LncBook: HSALNT0184221, LNCipedia: CACNA1C-AS4:2, |
URS0000EF128D_9606 | lncRNA | 1534 | 1 |
Ensembl: ENST00000669813 (view in UCSC) , ENST00000668748 (view in UCSC) , |
URS00008B3A5B_9606 | lncRNA | 759 | 3 |
LncBook: HSALNT0184218, LNCipedia: CACNA1C-AS4:3, NONCODE: NONHSAT025448.2, |
URS00009B0597_9606 | lncRNA | 735 | 2 |
LncBook: HSALNT0184219, NONCODE: NONHSAT163177.1, |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
esv2665790 | CNV | deletion | 23128226 |
esv3628307 | CNV | loss | 21293372 |
nsv1040370 | CNV | gain | 25217958 |
No disorders were found for CACNA1C-AS4 Gene.