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Aliases for CACNA1C-AS4 Gene
Subcategory (RNA class) for CACNA1C-AS4 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for CACNA1C-AS4 Gene
External Ids for CACNA1C-AS4 Gene
- HGNC: 40116
- Entrez Gene: 100874234
- Ensembl: ENSG00000256025
Additional External Ids for CACNA1C-AS4 Gene
- Ensembl:
Previous GeneCards Identifiers for CACNA1C-AS4 Gene
- GC00U933652
- GC12M002330
Summaries for CACNA1C-AS4 Gene
GeneCards Summary for CACNA1C-AS4 Gene
CACNA1C-AS4 (CACNA1C Antisense RNA 4) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for CACNA1C-AS4 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CACNA1C-AS4 Gene
Genomics for CACNA1C-AS4 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for CACNA1C-AS4 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J002223 | Promoter | 0.3 | EPDnew | 600.7 | +0.0 | 14 | 0.1 | CACNA1C-AS4 ENSG00000278255 DCP1B CACNA1C FKBP4 | ||
| GH12J002224 | Enhancer | 0.2 | dbSUPER | 600.7 | -1.1 | -1086 | 1 | CACNA1C-AS4 CACNA1C-IT3 lnc-DCP1B-6 DCP1B CACNA1C FKBP4 | ||
| GH12J002222 | Enhancer | 0.2 | dbSUPER | 600.7 | +0.8 | 792 | 1.1 | CACNA1C-AS4 CACNA1C-IT3 ENSG00000278255 DCP1B CACNA1C FKBP4 | ||
| GH12J002243 | Enhancer | 1.4 | Ensembl ENCODE CraniofacialAtlas dbSUPER | 12.7 | -24.4 | -24398 | 9.4 | HNRNPL GATAD2A TEAD4 ZNF629 TFE3 SOX13 NFKBIZ KDM1A RCOR2 FOXA1 | CACNA1C-AS4 ITFG2 DCP1B CACNA1C-IT3 CACNA1C lnc-DCP1B-6 lnc-DCP1B-9 FKBP4 | |
| GH12J002263 | Enhancer | 1.5 | FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 11.5 | -43.3 | -43287 | 6.7 | TEAD4 SP1 CEBPA JUND CEBPB FOXA2 FOS YY1 ZBTB33 NR2F2 | lnc-DCP1B-9 CACNA1C-AS4 CACNA1C-IT3 CACNA1C DCP1B FKBP4 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around CACNA1C-AS4 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for CACNA1C-AS4 Gene
Genomic Locations for CACNA1C-AS4 Gene
- chr12:2,219,485-2,223,481
- (GRCh38/hg38)
- Size:
- 3,997 bases
- Orientation:
- Minus strand
- chr12:2,329,703-2,332,645
- (GRCh37/hg19)
- Size:
- 2,943 bases
- Orientation:
- Minus strand
Genomic View for CACNA1C-AS4 Gene
Genes around CACNA1C-AS4 on UCSC Golden Path with GeneCards custom track
CACNA1C-AS4 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12p13.33 by HGNC
- 12p13.33 by Entrez Gene
- 12p13.33 by Ensembl
CACNA1C-AS4 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CACNA1C-AS4 Gene
Proteins for CACNA1C-AS4 Gene
Post-translational modifications for CACNA1C-AS4 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CACNA1C-AS4
- Origene Custom Protein Services for CACNA1C-AS4
No data available for DME Specific Peptides for CACNA1C-AS4 Gene
Domains & Families for CACNA1C-AS4 Gene
Gene Families for CACNA1C-AS4 Gene
- HGNC:
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CACNA1C-AS4 Gene
Function for CACNA1C-AS4 Gene
Phenotypes From GWAS Catalog for CACNA1C-AS4 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for CACNA1C-AS4 - Select products 50% OFF >
- * CACNA1C-AS4 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for CACNA1C-AS4
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for CACNA1C-AS4 - Select products 50% OFF >
- * CACNA1C-AS4 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-AS4 Gene
Localization for CACNA1C-AS4 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-AS4 Gene
Transcripts for CACNA1C-AS4 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for CACNA1C-AS4 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075B9D4_9606 | lncRNA | 737 | 5 |
HGNC: 40116, RefSeq: NR_046578, LncBook: HSALNT0184220, LNCipedia: CACNA1C-AS4:1, NONCODE: NONHSAT025449.2, |
| URS00005EB677_9606 | lncRNA | 735 | 3 |
Ensembl: ENST00000646962 (view in UCSC) , ENST00000544415 (view in UCSC) , LncBook: HSALNT0184221, LNCipedia: CACNA1C-AS4:2, |
| URS0000EF128D_9606 | lncRNA | 1534 | 1 |
Ensembl: ENST00000669813 (view in UCSC) , ENST00000668748 (view in UCSC) , |
| URS00008B3A5B_9606 | lncRNA | 759 | 3 |
LncBook: HSALNT0184218, LNCipedia: CACNA1C-AS4:3, NONCODE: NONHSAT025448.2, |
| URS00009B0597_9606 | lncRNA | 735 | 2 |
LncBook: HSALNT0184219, NONCODE: NONHSAT163177.1, |
CACNA1C-AS4 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for CACNA1C-AS4 Gene
- 2 NCBI additional mRNA sequence :
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for CACNA1C-AS4 - Select products 50% OFF >
- * CACNA1C-AS4 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Browse CRISPR knockouts for CACNA1C-AS4
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for CACNA1C-AS4 - Select products 50% OFF >
- * CACNA1C-AS4 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
Relevant External Links for CACNA1C-AS4 Gene
- GeneLoc Exon Structure for
- CACNA1C-AS4
Expression for CACNA1C-AS4 Gene
mRNA differential expression in normal tissues according to GTEx for CACNA1C-AS4 Gene
This gene is overexpressed in Testis (x26.9).
SOURCE GeneReport for Unigene cluster for CACNA1C-AS4 Gene:
Hs.372570Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-AS4 Gene
Orthologs for CACNA1C-AS4 Gene
No data available for Orthologs for CACNA1C-AS4 Gene
Paralogs for CACNA1C-AS4 Gene
No data available for Paralogs for CACNA1C-AS4 Gene
Variants for CACNA1C-AS4 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2665790 | CNV | deletion | 23128226 |
| esv3628307 | CNV | loss | 21293372 |
| nsv1040370 | CNV | gain | 25217958 |
Additional Variant Information for CACNA1C-AS4 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CACNA1C-AS4
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CACNA1C-AS4 Gene
Disorders for CACNA1C-AS4 Gene
Additional Disease Information for CACNA1C-AS4
No disorders were found for CACNA1C-AS4 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-AS4 Gene
Publications for CACNA1C-AS4 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
No data available for Mastermind for CACNA1C-AS4 Gene
Products for CACNA1C-AS4 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CACNA1C-AS4
- Origene Custom Protein Services for CACNA1C-AS4
- Browse OriGene Inhibitory RNA Products For CACNA1C-AS4
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for CACNA1C-AS4
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CACNA1C-AS4
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for CACNA1C-AS4
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for CACNA1C-AS4
- Search GeneCopoeia for miRNA 3'UTR Target clone products for CACNA1C-AS4
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for CACNA1C-AS4
Sources for CACNA1C-AS4 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB