Aliases for CACNA1C-AS4 Gene
Subcategory (RNA class) for CACNA1C-AS4 Gene
non-coding RNA
Quality Score for this RNA gene is
13
Aliases for CACNA1C-AS4 Gene
External Ids for CACNA1C-AS4 Gene
- HGNC: 40116
- Entrez Gene: 100874234
- Ensembl: ENSG00000256025
Previous GeneCards Identifiers for CACNA1C-AS4 Gene
- GC00U933652
- GC12M002330
Summaries for CACNA1C-AS4 Gene
GeneCards Summary for CACNA1C-AS4 Gene
CACNA1C-AS4 (CACNA1C Antisense RNA 4) is an RNA Gene, and is affiliated with the non-coding RNA class.
Additional gene information for CACNA1C-AS4 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1C-AS4 Gene
Genomics for CACNA1C-AS4 Gene
GeneHancer (GH) Regulatory Elements for CACNA1C-AS4 Gene
Promoters and enhancers for CACNA1C-AS4 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J002219 | Enhancer | 0.4 | Ensembl dbSUPER | 600.7 | +1.8 | 1780 | 0.2 | CACNA1C-AS4 ENSG00000278255 CACNA1C | ||
| GH12J002222 | Enhancer | 0.4 | Ensembl dbSUPER | 600.7 | +1.2 | 1180 | 0.6 | CACNA1C-AS4 ENSG00000278255 CACNA1C | ||
| GH12J002224 | Enhancer | 0.2 | dbSUPER | 600.7 | -1.1 | -1086 | 1 | CACNA1C-AS4 CACNA1C-IT3 PIR46918 CACNA1C | ||
| GH12J002243 | Enhancer | 1.4 | Ensembl ENCODE dbSUPER | 12.7 | -24.4 | -24398 | 9.4 | ZNF652 SP1 ELF3 CEBPG RERE ZNF687 TFE3 SP7 HNF1A PPARG | CACNA1C-AS4 ITFG2 DCP1B CACNA1C-IT3 CACNA1C PIR46918 | |
| GH12J002263 | Enhancer | 1.4 | FANTOM5 Ensembl ENCODE dbSUPER | 11.5 | -43.3 | -43286 | 6.7 | SP1 POLR2A RXRA CEBPA FOXA2 JUND FOS YY1 ZBTB33 RCOR1 | CACNA1C-AS4 CACNA1C-IT3 CACNA1C PIR46918 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around CACNA1C-AS4 on UCSC Golden Path with GeneCards custom track
Genomic Locations for CACNA1C-AS4 Gene
Genomic Locations for CACNA1C-AS4 Gene
- chr12:2,220,537-2,223,481
- (GRCh38/hg38)
- Size:
- 2,945 bases
- Orientation:
- Minus strand
- chr12:2,329,703-2,332,645
- (GRCh37/hg19)
- Size:
- 2,943 bases
- Orientation:
- Minus strand
Genomic View for CACNA1C-AS4 Gene
Genes around CACNA1C-AS4 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12p13.33 by HGNC
- 12p13.33 by Entrez Gene
- 12p13.33 by Ensembl
CACNA1C-AS4 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CACNA1C-AS4 Gene
Proteins for CACNA1C-AS4 Gene
Post-translational modifications for CACNA1C-AS4 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CACNA1C-AS4
- Origene Custom Protein Services for CACNA1C-AS4
No data available for DME Specific Peptides for CACNA1C-AS4 Gene
Domains & Families for CACNA1C-AS4 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1C-AS4 Gene
Function for CACNA1C-AS4 Gene
Phenotypes From GWAS Catalog for CACNA1C-AS4 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CACNA1C-AS4
-
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for CACNA1C-AS4 - Now 50% OFF >
- * CACNA1C-AS4 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * CACNA1C-AS4 CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for CACNA1C-AS4
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for CACNA1C-AS4 - Now 50% OFF >
- * CACNA1C-AS4 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * CACNA1C-AS4 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-AS4 Gene
Localization for CACNA1C-AS4 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-AS4 Gene
Transcripts for CACNA1C-AS4 Gene
mRNA/cDNA for CACNA1C-AS4 Gene
- (2) Additional mRNA sequences :
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000544415 735 bps (ENST00000544415.1)
- (2) RNA Central transcripts :
Unigene Clusters for CACNA1C-AS4 Gene
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for CACNA1C-AS4 - Now 50% OFF >
- * CACNA1C-AS4 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * CACNA1C-AS4 CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for CACNA1C-AS4
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for CACNA1C-AS4 - Now 50% OFF >
- * CACNA1C-AS4 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * CACNA1C-AS4 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
Relevant External Links for CACNA1C-AS4 Gene
- GeneLoc Exon Structure for
- CACNA1C-AS4
- ECgene alternative splicing isoforms for
- CACNA1C-AS4
Expression for CACNA1C-AS4 Gene
mRNA differential expression in normal tissues according to GTEx for CACNA1C-AS4 Gene
This gene is overexpressed in Testis (x26.9).
SOURCE GeneReport for Unigene cluster for CACNA1C-AS4 Gene:
Hs.372570
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-AS4 Gene
Orthologs for CACNA1C-AS4 Gene
No data available for Orthologs for CACNA1C-AS4 Gene
Paralogs for CACNA1C-AS4 Gene
No data available for Paralogs for CACNA1C-AS4 Gene
Variants for CACNA1C-AS4 Gene
| SNP ID | Clin | Chr 12 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000143742 | -- | 2,224,506(-) | CTCCACCCCT/CT | upstream_transcript_variant | |
| rs1000736153 | -- | 2,222,200(-) | C/T | non_coding_transcript_variant | |
| rs1001647927 | -- | 2,224,120(-) | T/C | upstream_transcript_variant | |
| rs1002064785 | -- | 2,221,398(-) | G/T | intron_variant | |
| rs1003256673 | -- | 2,220,672(-) | G/C | non_coding_transcript_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2665790 | CNV | deletion | 23128226 |
| esv3628307 | CNV | loss | 21293372 |
| nsv1040370 | CNV | gain | 25217958 |
Additional Variant Information for CACNA1C-AS4 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CACNA1C-AS4
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1C-AS4 Gene
Disorders for CACNA1C-AS4 Gene
Additional Disease Information for CACNA1C-AS4
No disorders were found for CACNA1C-AS4 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-AS4 Gene
Publications for CACNA1C-AS4 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
No data available for External Links for CACNA1C-AS4 Gene
Products for CACNA1C-AS4 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CACNA1C-AS4
- Origene Custom Protein Services for CACNA1C-AS4
- Browse OriGene Inhibitory RNA Products For CACNA1C-AS4
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for CACNA1C-AS4
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CACNA1C-AS4
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for CACNA1C-AS4
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for CACNA1C-AS4
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for CACNA1C-AS4
- Search GeneCopoeia for miRNA 3'UTR Target clone products for CACNA1C-AS4
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for CACNA1C-AS4
Sources for CACNA1C-AS4 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
- (149) GWAS Catalog
- (150) Monarch Initiative
- (151) DataMed
- (152) HumanCyc
- (153) genomics-online
- (154) UCNEbase
- (155) EPDnew
- (156) Applied Biosystems
- (157) GlyConnect
- (158) Aminode
- (159) GeneCopoeia
- (160) GPS-Prot
- (161) RNACentral
- (162) LncRNADisease
- (163) LOVD
- (164) miR2Disease
- (165) DiseaseEnhancer
- (166) Boster Bio
- (167) Biorbyt
- (168) Biocompare
- (169) Mastermind