Aliases for CACNA1C-AS4 Gene

Subcategory (RNA class) for CACNA1C-AS4 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for CACNA1C-AS4 Gene

  • CACNA1C Antisense RNA 4 2 3 5
  • CACNA1C-AS4 2 5 165
  • CACNA1C Antisense RNA 4 (Non-Protein Coding) 2 3
  • NONHSAG010184.2 91
  • HSALNG0088584 164

External Ids for CACNA1C-AS4 Gene

Additional External Ids for CACNA1C-AS4 Gene

Previous GeneCards Identifiers for CACNA1C-AS4 Gene

  • GC00U933652
  • GC12M002330

Summaries for CACNA1C-AS4 Gene

GeneCards Summary for CACNA1C-AS4 Gene

CACNA1C-AS4 (CACNA1C Antisense RNA 4) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CACNA1C-AS4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CACNA1C-AS4 Gene

Genomics for CACNA1C-AS4 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CACNA1C-AS4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J002223 Promoter 0.3 EPDnew 600.7 +0.0 14 0.1 CACNA1C-AS4 ENSG00000278255 DCP1B CACNA1C FKBP4
GH12J002224 Enhancer 0.2 dbSUPER 600.7 -1.1 -1086 1 CACNA1C-AS4 CACNA1C-IT3 lnc-DCP1B-6 DCP1B CACNA1C FKBP4
GH12J002222 Enhancer 0.2 dbSUPER 600.7 +0.8 792 1.1 CACNA1C-AS4 CACNA1C-IT3 ENSG00000278255 DCP1B CACNA1C FKBP4
GH12J002243 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.7 -24.4 -24398 9.4 HNRNPL GATAD2A TEAD4 ZNF629 TFE3 SOX13 NFKBIZ KDM1A RCOR2 FOXA1 CACNA1C-AS4 ITFG2 DCP1B CACNA1C-IT3 CACNA1C lnc-DCP1B-6 lnc-DCP1B-9 FKBP4
GH12J002263 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.5 -43.3 -43287 6.7 TEAD4 SP1 CEBPA JUND CEBPB FOXA2 FOS YY1 ZBTB33 NR2F2 lnc-DCP1B-9 CACNA1C-AS4 CACNA1C-IT3 CACNA1C DCP1B FKBP4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CACNA1C-AS4 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CACNA1C-AS4 Gene

Genomic Locations for CACNA1C-AS4 Gene
chr12:2,219,485-2,223,481
(GRCh38/hg38)
Size:
3,997 bases
Orientation:
Minus strand
chr12:2,329,703-2,332,645
(GRCh37/hg19)
Size:
2,943 bases
Orientation:
Minus strand

Genomic View for CACNA1C-AS4 Gene

Genes around CACNA1C-AS4 on UCSC Golden Path with GeneCards custom track
CACNA1C-AS4 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
CACNA1C-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-AS4 Gene

Proteins for CACNA1C-AS4 Gene

Post-translational modifications for CACNA1C-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-AS4 Gene

Domains & Families for CACNA1C-AS4 Gene

Gene Families for CACNA1C-AS4 Gene

genes like me logo Genes that share domains with CACNA1C-AS4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CACNA1C-AS4 Gene

Function for CACNA1C-AS4 Gene

Phenotypes From GWAS Catalog for CACNA1C-AS4 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-AS4 Gene

Localization for CACNA1C-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-AS4 Gene

Pathways & Interactions for CACNA1C-AS4 Gene

PathCards logo

SuperPathways for CACNA1C-AS4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CACNA1C-AS4 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CACNA1C-AS4 Gene

Drugs & Compounds for CACNA1C-AS4 Gene

No Compound Related Data Available

Transcripts for CACNA1C-AS4 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CACNA1C-AS4 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B9D4_9606 lncRNA 737 5

HGNC: 40116,

RefSeq: NR_046578,

LncBook: HSALNT0184220,

LNCipedia: CACNA1C-AS4:1,

NONCODE: NONHSAT025449.2,

URS00005EB677_9606 lncRNA 735 3

Ensembl: ENST00000646962 (view in UCSC) , ENST00000544415 (view in UCSC) ,

LncBook: HSALNT0184221,

LNCipedia: CACNA1C-AS4:2,

URS0000EF128D_9606 lncRNA 1534 1

Ensembl: ENST00000669813 (view in UCSC) , ENST00000668748 (view in UCSC) ,

URS00008B3A5B_9606 lncRNA 759 3

LncBook: HSALNT0184218,

LNCipedia: CACNA1C-AS4:3,

NONCODE: NONHSAT025448.2,

URS00009B0597_9606 lncRNA 735 2

LncBook: HSALNT0184219,

NONCODE: NONHSAT163177.1,

CACNA1C-AS4 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CACNA1C-AS4 Gene

2 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-AS4 Gene

No ASD Table

Relevant External Links for CACNA1C-AS4 Gene

GeneLoc Exon Structure for
CACNA1C-AS4

Expression for CACNA1C-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CACNA1C-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1C-AS4 Gene

This gene is overexpressed in Testis (x26.9).

SOURCE GeneReport for Unigene cluster for CACNA1C-AS4 Gene:

Hs.372570
genes like me logo Genes that share expression patterns with CACNA1C-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-AS4 Gene

Orthologs for CACNA1C-AS4 Gene

Evolution for CACNA1C-AS4 Gene

ENSEMBL:
Gene Tree for CACNA1C-AS4 (if available)
TreeFam:
Gene Tree for CACNA1C-AS4 (if available)

No data available for Orthologs for CACNA1C-AS4 Gene

Paralogs for CACNA1C-AS4 Gene

No data available for Paralogs for CACNA1C-AS4 Gene

Variants for CACNA1C-AS4 Gene

Additional dbSNP identifiers (rs#s) for CACNA1C-AS4 Gene

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-AS4 Gene

Variant ID Type Subtype PubMed ID
esv2665790 CNV deletion 23128226
esv3628307 CNV loss 21293372
nsv1040370 CNV gain 25217958

Additional Variant Information for CACNA1C-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-AS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CACNA1C-AS4 Gene

Disorders for CACNA1C-AS4 Gene

No disorders were found for CACNA1C-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-AS4 Gene

Publications for CACNA1C-AS4 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for CACNA1C-AS4 Gene

Products for CACNA1C-AS4 Gene

Sources for CACNA1C-AS4 Gene