Aliases for CACNA1C-AS4 Gene

Subcategory (RNA class) for CACNA1C-AS4 Gene


Number of RNA Genes sources:

3 / 14

Aliases for CACNA1C-AS4 Gene

  • CACNA1C Antisense RNA 4 2 3 5
  • CACNA1C Antisense RNA 4 (Non-Protein Coding) 2 3
  • CACNA1C-AS4 2 168
  • NONHSAG010184 92
  • HSALNG0088584 167

External Ids for CACNA1C-AS4 Gene

Additional External Ids for CACNA1C-AS4 Gene

Previous GeneCards Identifiers for CACNA1C-AS4 Gene

  • GC00U933652
  • GC12M002330

Summaries for CACNA1C-AS4 Gene

GeneCards Summary for CACNA1C-AS4 Gene

CACNA1C-AS4 (CACNA1C Antisense RNA 4) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CACNA1C-AS4 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CACNA1C-AS4 Gene

Genomics for CACNA1C-AS4 Gene

GeneHancer (GH) Regulatory Elements for CACNA1C-AS4 Gene

Promoters and enhancers for CACNA1C-AS4 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J002222 Enhancer 0.2 dbSUPER 500.7 +0.8 792 1.1 CACNA1C-AS4 CACNA1C-IT3 ENSG00000278255 CACNA1C
GH12J002224 Enhancer 0.2 dbSUPER 500.7 -1.1 -1086 1 CACNA1C-AS4 CACNA1C-IT3 lnc-DCP1B-6 CACNA1C
GH12J002243 Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas dbSUPER 12.7 -24.4 -24398 9.4 ZSCAN5C NCOR1 JUND TEAD4 FOS ZIC2 KDM6A TCF7 ZNF423 FOXA1 CACNA1C-AS4 ITFG2 DCP1B CACNA1C-IT3 CACNA1C lnc-DCP1B-6 lnc-DCP1B-9
GH12J002263 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.5 -43.3 -43287 6.7 NCOR1 JUND TEAD4 FOS REST HDAC2 FOXA2 NR2F2 ZBTB33 EZH2 lnc-DCP1B-9 CACNA1C-AS4 CACNA1C-IT3 CACNA1C
GH12J002256 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.9 -35.2 -35173 5.5 ZNF300 NONO ZBTB5 ZBTB10 ZNF423 FOXA1 ZNF274 ZNF148 ZNF266 ZNF585B TULP3 ITFG2 DCP1B CBX3P4 IQSEC3P1 ENSG00000227081 CACNA1C-AS4 NRIP2 LINC00942 CACNA1C-IT3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CACNA1C-AS4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CACNA1C-AS4 Gene

Genomic Locations for CACNA1C-AS4 Gene
3,997 bases
Minus strand
2,943 bases
Minus strand

Genomic View for CACNA1C-AS4 Gene

Genes around CACNA1C-AS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-AS4 Gene

Proteins for CACNA1C-AS4 Gene

Post-translational modifications for CACNA1C-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-AS4 Gene

Domains & Families for CACNA1C-AS4 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CACNA1C-AS4 Gene

Function for CACNA1C-AS4 Gene

Phenotypes From GWAS Catalog for CACNA1C-AS4 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-AS4 Gene

Localization for CACNA1C-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-AS4 Gene

Pathways & Interactions for CACNA1C-AS4 Gene

PathCards logo

SuperPathways for CACNA1C-AS4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CACNA1C-AS4 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CACNA1C-AS4 Gene

Drugs & Compounds for CACNA1C-AS4 Gene

No Compound Related Data Available

Transcripts for CACNA1C-AS4 Gene

mRNA/cDNA for CACNA1C-AS4 Gene

5 RNACentral transcripts :
2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
4 LncBook transcripts :
3 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-AS4 Gene

No ASD Table

Relevant External Links for CACNA1C-AS4 Gene

GeneLoc Exon Structure for

Expression for CACNA1C-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CACNA1C-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1C-AS4 Gene

This gene is overexpressed in Testis (x26.9).

SOURCE GeneReport for Unigene cluster for CACNA1C-AS4 Gene:

genes like me logo Genes that share expression patterns with CACNA1C-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-AS4 Gene

Orthologs for CACNA1C-AS4 Gene

Evolution for CACNA1C-AS4 Gene

Gene Tree for CACNA1C-AS4 (if available)
Gene Tree for CACNA1C-AS4 (if available)

No data available for Orthologs for CACNA1C-AS4 Gene

Paralogs for CACNA1C-AS4 Gene

No data available for Paralogs for CACNA1C-AS4 Gene

Variants for CACNA1C-AS4 Gene

Additional dbSNP identifiers (rs#s) for CACNA1C-AS4 Gene

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-AS4 Gene

Variant ID Type Subtype PubMed ID
esv2665790 CNV deletion 23128226
esv3628307 CNV loss 21293372
nsv1040370 CNV gain 25217958

Additional Variant Information for CACNA1C-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for CACNA1C-AS4 Gene

Disorders for CACNA1C-AS4 Gene

Additional Disease Information for CACNA1C-AS4

No disorders were found for CACNA1C-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-AS4 Gene

Publications for CACNA1C-AS4 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for CACNA1C-AS4 Gene

Products for CACNA1C-AS4 Gene

Sources for CACNA1C-AS4 Gene