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Aliases for CACNA1C-AS4 Gene

Subcategory (RNA class) for CACNA1C-AS4 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CACNA1C-AS4 Gene

  • CACNA1C Antisense RNA 4 2 3 5
  • CACNA1C Antisense RNA 4 (Non-Protein Coding) 2

External Ids for CACNA1C-AS4 Gene

Previous GeneCards Identifiers for CACNA1C-AS4 Gene

  • GC00U933652
  • GC12M002330

Summaries for CACNA1C-AS4 Gene

GeneCards Summary for CACNA1C-AS4 Gene

CACNA1C-AS4 (CACNA1C Antisense RNA 4) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CACNA1C-AS4 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1C-AS4 Gene

Genomics for CACNA1C-AS4 Gene

GeneHancer (GH) Regulatory Elements for CACNA1C-AS4 Gene

Promoters and enhancers for CACNA1C-AS4 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I002224 Enhancer 0.2 dbSUPER 550.8 -1.1 -1086 1 CACNA1C-AS4 CACNA1C-IT3 PIR46918 CACNA1C
GH12I002222 Enhancer 0.2 dbSUPER 550.8 +0.8 792 1.1 CACNA1C-AS4 CACNA1C-IT3 ENSG00000278255 CACNA1C
GH12I002263 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -43.4 -43391 6.5 FOXA2 MAX SIN3A ZNF48 RAD21 YY1 POLR2A HNF4G RCOR1 FOS CACNA1C-AS4 CACNA1C-IT3 CACNA1C PIR46918
GH12I002247 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.6 -25.2 -25177 2.4 PKNOX1 FOXA2 MLX ARID4B DMAP1 SLC30A9 ZNF143 ATF7 RUNX3 SP5 CACNA1C-AS4 CACNA1C-IT3 PIR46918 CACNA1C
GH12I002243 Enhancer 1.1 Ensembl ENCODE dbSUPER 12.7 -20.9 -20903 2.5 FOXA2 ZBTB21 INSM2 FEZF1 ZIC2 TEAD3 ZNF366 ZSCAN5C SCRT2 FOS CACNA1C-AS4 CACNA1C-IT3 PIR46918 CACNA1C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CACNA1C-AS4 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CACNA1C-AS4 Gene

Genomic Locations for CACNA1C-AS4 Gene
chr12:2,220,537-2,223,481
(GRCh38/hg38)
Size:
2,945 bases
Orientation:
Minus strand
chr12:2,329,703-2,332,645
(GRCh37/hg19)

Genomic View for CACNA1C-AS4 Gene

Genes around CACNA1C-AS4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-AS4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-AS4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-AS4 Gene

Proteins for CACNA1C-AS4 Gene

Post-translational modifications for CACNA1C-AS4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-AS4 Gene

Domains & Families for CACNA1C-AS4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1C-AS4 Gene

Function for CACNA1C-AS4 Gene

Phenotypes From GWAS Catalog for CACNA1C-AS4 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-AS4 Gene

Localization for CACNA1C-AS4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-AS4 Gene

Pathways & Interactions for CACNA1C-AS4 Gene

SuperPathways for CACNA1C-AS4 Gene

No Data Available

Interacting Proteins for CACNA1C-AS4 Gene

Gene Ontology (GO) - Biological Process for CACNA1C-AS4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA1C-AS4 Gene

Drugs & Compounds for CACNA1C-AS4 Gene

No Compound Related Data Available

Transcripts for CACNA1C-AS4 Gene

mRNA/cDNA for CACNA1C-AS4 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CACNA1C-AS4 Gene

CACNA1C antisense RNA 4:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-AS4 Gene

No ASD Table

Relevant External Links for CACNA1C-AS4 Gene

GeneLoc Exon Structure for
CACNA1C-AS4
ECgene alternative splicing isoforms for
CACNA1C-AS4

Expression for CACNA1C-AS4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACNA1C-AS4 Gene

mRNA differential expression in normal tissues according to GTEx for CACNA1C-AS4 Gene

This gene is overexpressed in Testis (x26.9).

SOURCE GeneReport for Unigene cluster for CACNA1C-AS4 Gene:

Hs.372570
genes like me logo Genes that share expression patterns with CACNA1C-AS4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-AS4 Gene

Orthologs for CACNA1C-AS4 Gene

Evolution for CACNA1C-AS4 Gene

ENSEMBL:
Gene Tree for CACNA1C-AS4 (if available)
TreeFam:
Gene Tree for CACNA1C-AS4 (if available)

No data available for Orthologs for CACNA1C-AS4 Gene

Paralogs for CACNA1C-AS4 Gene

No data available for Paralogs for CACNA1C-AS4 Gene

Variants for CACNA1C-AS4 Gene

Sequence variations from dbSNP and Humsavar for CACNA1C-AS4 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000143742 -- 2,224,506(-) CTCCACCCCT/CT upstream_transcript_variant
rs1000736153 -- 2,222,200(-) C/T non_coding_transcript_variant
rs1001647927 -- 2,224,120(-) T/C upstream_transcript_variant
rs1002064785 -- 2,221,398(-) G/T intron_variant
rs1003256673 -- 2,220,672(-) G/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-AS4 Gene

Variant ID Type Subtype PubMed ID
esv2665790 CNV deletion 23128226
esv3628307 CNV loss 21293372
nsv1040370 CNV gain 25217958

Additional Variant Information for CACNA1C-AS4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-AS4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1C-AS4 Gene

Disorders for CACNA1C-AS4 Gene

Additional Disease Information for CACNA1C-AS4

No disorders were found for CACNA1C-AS4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-AS4 Gene

Publications for CACNA1C-AS4 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for CACNA1C-AS4 Gene

Sources for CACNA1C-AS4 Gene

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