Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CACNA1C-AS2 Gene

Subcategory (RNA class) for CACNA1C-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CACNA1C-AS2 Gene

  • CACNA1C Antisense RNA 2 2 3 5
  • CACNA1C Antisense RNA 2 (Non-Protein Coding) 2

External Ids for CACNA1C-AS2 Gene

Previous GeneCards Identifiers for CACNA1C-AS2 Gene

  • GC00U933181
  • GC12M002778

Summaries for CACNA1C-AS2 Gene

GeneCards Summary for CACNA1C-AS2 Gene

CACNA1C-AS2 (CACNA1C Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CACNA1C-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CACNA1C-AS2 Gene

Genomics for CACNA1C-AS2 Gene

GeneHancer (GH) Regulatory Elements for CACNA1C-AS2 Gene

Promoters and enhancers for CACNA1C-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I002682 Enhancer 0.4 ENCODE 0.4 -10.8 -10840 0.2 CTCF ZNF654 RAD21 FKBP4 CBX3P4 ITFG2 CACNA1C-AS1 CACNA1C-AS2 CACNA1C
GH12I002685 Enhancer 0.4 ENCODE 0.4 -10.5 -10480 0.2 CTCF RAD21 FKBP4 CBX3P4 ITFG2 CACNA1C-AS1 CACNA1C-AS2 CACNA1C
GH12I002683 Enhancer 0.3 ENCODE 0.4 -11.1 -11120 0 CTCF FKBP4 CBX3P4 ITFG2 CACNA1C-AS1 CACNA1C-AS2 CACNA1C
GH12I002684 Enhancer 0.2 ENCODE 0.4 -10.2 -10230 0.1 FKBP4 CBX3P4 ITFG2 CACNA1C-AS1 CACNA1C-AS2 CACNA1C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CACNA1C-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CACNA1C-AS2 Gene

Genomic Locations for CACNA1C-AS2 Gene
chr12:2,668,500-2,672,220
(GRCh38/hg38)
Size:
3,721 bases
Orientation:
Minus strand
chr12:2,777,666-2,781,386
(GRCh37/hg19)

Genomic View for CACNA1C-AS2 Gene

Genes around CACNA1C-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-AS2 Gene

Proteins for CACNA1C-AS2 Gene

Post-translational modifications for CACNA1C-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-AS2 Gene

Domains & Families for CACNA1C-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CACNA1C-AS2 Gene

Function for CACNA1C-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-AS2 Gene

Localization for CACNA1C-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-AS2 Gene

Pathways & Interactions for CACNA1C-AS2 Gene

SuperPathways for CACNA1C-AS2 Gene

No Data Available

Interacting Proteins for CACNA1C-AS2 Gene

Gene Ontology (GO) - Biological Process for CACNA1C-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CACNA1C-AS2 Gene

Drugs & Compounds for CACNA1C-AS2 Gene

No Compound Related Data Available

Transcripts for CACNA1C-AS2 Gene

mRNA/cDNA for CACNA1C-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-AS2 Gene

No ASD Table

Relevant External Links for CACNA1C-AS2 Gene

GeneLoc Exon Structure for
CACNA1C-AS2
ECgene alternative splicing isoforms for
CACNA1C-AS2

Expression for CACNA1C-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CACNA1C-AS2 Gene

genes like me logo Genes that share expression patterns with CACNA1C-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-AS2 Gene

Orthologs for CACNA1C-AS2 Gene

Evolution for CACNA1C-AS2 Gene

ENSEMBL:
Gene Tree for CACNA1C-AS2 (if available)
TreeFam:
Gene Tree for CACNA1C-AS2 (if available)

No data available for Orthologs for CACNA1C-AS2 Gene

Paralogs for CACNA1C-AS2 Gene

No data available for Paralogs for CACNA1C-AS2 Gene

Variants for CACNA1C-AS2 Gene

Sequence variations from dbSNP and Humsavar for CACNA1C-AS2 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1012584625 uncertain-significance, Brugada syndrome, Timothy syndrome 2,668,929(-) G/A non_coding_transcript_variant
rs202194703 uncertain-significance, likely-benign, not specified, Long QT syndrome 2,668,950(-) C/T non_coding_transcript_variant
rs369267978 uncertain-significance, benign, Timothy syndrome, Brugada syndrome, not specified, Long QT syndrome 2,669,044(-) G/A/T intron_variant
rs377568567 benign, likely-benign, not specified, Timothy syndrome, Brugada syndrome, Long QT syndrome 2,668,924(-) C/T non_coding_transcript_variant
rs561365937 uncertain-significance, Timothy syndrome, Brugada syndrome 2,669,048(-) G/A/C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv1047874 CNV gain 25217958
nsv832308 CNV loss 17160897

Additional Variant Information for CACNA1C-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1C-AS2 Gene

Disorders for CACNA1C-AS2 Gene

Additional Disease Information for CACNA1C-AS2

No disorders were found for CACNA1C-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CACNA1C-AS2 Gene

Publications for CACNA1C-AS2 Gene

No publications were found for CACNA1C-AS2 Gene.

Products for CACNA1C-AS2 Gene

Sources for CACNA1C-AS2 Gene

Content
Loading form....