Aliases for CACNA1C-AS2 Gene

Subcategory (RNA class) for CACNA1C-AS2 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for CACNA1C-AS2 Gene

  • CACNA1C Antisense RNA 2 2 3 5
  • CACNA1C Antisense RNA 2 (Non-Protein Coding) 2 3
  • CACNA1C-AS2 2 168
  • HSALNG0088597 167
  • NONHSAG010193 92

External Ids for CACNA1C-AS2 Gene

Additional External Ids for CACNA1C-AS2 Gene

Previous GeneCards Identifiers for CACNA1C-AS2 Gene

  • GC00U933181
  • GC12M002778

Summaries for CACNA1C-AS2 Gene

GeneCards Summary for CACNA1C-AS2 Gene

CACNA1C-AS2 (CACNA1C Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with CACNA1C-AS2 include Astrocytoma and Timothy Syndrome.

Additional gene information for CACNA1C-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CACNA1C-AS2 Gene

Genomics for CACNA1C-AS2 Gene

GeneHancer (GH) Regulatory Elements for CACNA1C-AS2 Gene

Promoters and enhancers for CACNA1C-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J002674 Enhancer 0.5 Ensembl 0.7 -2.4 -2388 0.4 CTCF ZBTB5 ZNF316 ZNF263 MAFK SP1 CC2D1A EMSY CACNA1C-AS2 piR-32214-101 CACNA1C
GH12J002684 Enhancer 0.7 Ensembl ENCODE 0.4 -11.2 -11179 3.2 CTCF ZIC2 RAD21 SMC3 ZNF654 CHD4 KLF1 ITFG2 FKBP4 CBX3P4 ENSG00000227081 piR-32214-101 CACNA1C-AS1 CACNA1C-AS2 CACNA1C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CACNA1C-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CACNA1C-AS2 Gene

Genomic Locations for CACNA1C-AS2 Gene
chr12:2,668,500-2,672,221
(GRCh38/hg38)
Size:
3,722 bases
Orientation:
Minus strand
chr12:2,777,666-2,781,386
(GRCh37/hg19)
Size:
3,721 bases
Orientation:
Minus strand

Genomic View for CACNA1C-AS2 Gene

Genes around CACNA1C-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CACNA1C-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CACNA1C-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CACNA1C-AS2 Gene

Proteins for CACNA1C-AS2 Gene

Post-translational modifications for CACNA1C-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CACNA1C-AS2 Gene

Domains & Families for CACNA1C-AS2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CACNA1C-AS2 Gene

Function for CACNA1C-AS2 Gene

Phenotypes From GWAS Catalog for CACNA1C-AS2 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CACNA1C-AS2 Gene

Localization for CACNA1C-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CACNA1C-AS2 Gene

Pathways & Interactions for CACNA1C-AS2 Gene

PathCards logo

SuperPathways for CACNA1C-AS2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for CACNA1C-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CACNA1C-AS2 Gene

Drugs & Compounds for CACNA1C-AS2 Gene

No Compound Related Data Available

Transcripts for CACNA1C-AS2 Gene

mRNA/cDNA for CACNA1C-AS2 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CACNA1C-AS2 Gene

No ASD Table

Relevant External Links for CACNA1C-AS2 Gene

GeneLoc Exon Structure for
CACNA1C-AS2

Expression for CACNA1C-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CACNA1C-AS2 Gene

genes like me logo Genes that share expression patterns with CACNA1C-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CACNA1C-AS2 Gene

Orthologs for CACNA1C-AS2 Gene

Evolution for CACNA1C-AS2 Gene

ENSEMBL:
Gene Tree for CACNA1C-AS2 (if available)
TreeFam:
Gene Tree for CACNA1C-AS2 (if available)

No data available for Orthologs for CACNA1C-AS2 Gene

Paralogs for CACNA1C-AS2 Gene

No data available for Paralogs for CACNA1C-AS2 Gene

Variants for CACNA1C-AS2 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for CACNA1C-AS2 Gene

SNP ID Clinical significance and condition Chr 12 pos Variation AA Info Type
658373 Uncertain Significance: Long QT syndrome 2,669,014(-) G/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
669624 Benign: not provided 2,669,338(-) G/GA INTRON_VARIANT
673266 Benign: not provided 2,668,602(-) A/G NON_CODING_TRANSCRIPT_VARIANT,INTRON_VARIANT
695147 Benign: not provided 2,669,106(-) G/GC INTRON_VARIANT
695632 Benign: not provided 2,668,886(-) A/G NON_CODING_TRANSCRIPT_VARIANT,INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for CACNA1C-AS2 Gene

Structural Variations from Database of Genomic Variants (DGV) for CACNA1C-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv1047874 CNV gain 25217958
nsv832308 CNV loss 17160897

Additional Variant Information for CACNA1C-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CACNA1C-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CACNA1C-AS2 Gene

Disorders for CACNA1C-AS2 Gene

MalaCards: The human disease database

(3) MalaCards diseases for CACNA1C-AS2 Gene - From: LncRNADisease and GeneCards

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
timothy syndrome
  • ts
brugada syndrome
  • right bundle branch block, st segment elevation, and sudden death syndrome
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CACNA1C-AS2

genes like me logo Genes that share disorders with CACNA1C-AS2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CACNA1C-AS2 Gene

Publications for CACNA1C-AS2 Gene

No publications were found for CACNA1C-AS2 Gene.

No data available for Mastermind for CACNA1C-AS2 Gene

Products for CACNA1C-AS2 Gene

Sources for CACNA1C-AS2 Gene