This locus represents naturally occurring readthrough transcription between the neighboring carbonic anhydrase 5B pseudogene 1 and carbonic anhydrase 5B genes on chromosome X. The readthrough transcription is not predicted to produce a protein product. [provided by RefSeq, Jan 2019] See more...

Aliases for CA5BP1-CA5B Gene

Data sources for CA5BP1-CA5B Gene:

Subcategory (RNA class) for CA5BP1-CA5B Gene

lncRNA

Aliases for CA5BP1-CA5B Gene

External Ids for CA5BP1-CA5B Gene

Previous GeneCards Identifiers for CA5BP1-CA5B Gene

  • GC0XU902399
  • GC0XP015676

Summaries for CA5BP1-CA5B Gene

Entrez Gene Summary for CA5BP1-CA5B Gene

  • This locus represents naturally occurring readthrough transcription between the neighboring carbonic anhydrase 5B pseudogene 1 and carbonic anhydrase 5B genes on chromosome X. The readthrough transcription is not predicted to produce a protein product. [provided by RefSeq, Jan 2019]

GeneCards Summary for CA5BP1-CA5B Gene

CA5BP1-CA5B (CA5BP1-CA5B Readthrough) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for CA5BP1-CA5B Gene

No data available for CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CA5BP1-CA5B Gene

Genomics for CA5BP1-CA5B Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for CA5BP1-CA5B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ015673 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.9 923 3.9 ZSCAN16 TBP ZBTB10 SP1 MXD4 MNT SMAD5 IRF2 MBD2 ZNF217 CLTRN CA5BP1 CA5BP1-CA5B ENSG00000285602 HSALNG0136786 CA5B ENSG00000200620 PIR AP1S2 PIGA
GH0XJ015663 Promoter/Enhancer 1 EPDnew Ensembl ENCODE dbSUPER 0.4 -10.5 -10471 2.5 ZNF189 ZNF652 CLTRN HSALNG0136784 CA5BP1-CA5B ENSG00000285602 ACE2
GH0XJ015737 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 0.2 +63.6 63574 2.6 TBP ZBTB10 SP1 MNT IKZF1 SMAD5 BHLHE40 ZNF610 SIN3A VEZF1 CA5B CLTRN CA5BP1 ENSG00000200620 VEGFD piR-32214-707 lnc-CLTRN-2 ZRSR2 CA5BP1-CA5B
GH0XJ015687 Enhancer 0.8 Ensembl ENCODE 0.4 +11.7 11686 2.4 CTCF FOXA2 TRIM22 SMC3 RAD21 TEAD3 FOXA1 MEIS2 PKNOX1 ZNF660 CLTRN CA5B CA5BP1 CA5BP1-CA5B HSALNG0136786
GH0XJ015680 Enhancer 0.6 ENCODE 0.4 +5.8 5819 0.9 GABPA BHLHE40 HDAC2 ZBTB48 NR2F1 TEAD4 NR2F6 ESRRA GABPB1 CREM PIR CA5B CA5BP1 CA5BP1-CA5B CLTRN HSALNG0136786
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CA5BP1-CA5B on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CA5BP1-CA5B Gene

Latest Assembly
chrX:15,674,915-15,788,411
(GRCh38/hg38)
Size:
113,497 bases
Orientation:
Plus strand

Previous Assembly
chrX:15,693,581-15,806,534
(GRCh37/hg19 by Entrez Gene)
Size:
112,954 bases
Orientation:
Plus strand

Genomic View for CA5BP1-CA5B Gene

Genes around CA5BP1-CA5B on UCSC Golden Path with GeneCards custom track
CA5BP1-CA5B in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
CA5BP1-CA5B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CA5BP1-CA5B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CA5BP1-CA5B Gene

Proteins for CA5BP1-CA5B Gene

Post-translational modifications for CA5BP1-CA5B Gene

No Post-translational modifications

No data available for DME Specific Peptides for CA5BP1-CA5B Gene

Domains & Families for CA5BP1-CA5B Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for CA5BP1-CA5B Gene

Function for CA5BP1-CA5B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CA5BP1-CA5B Gene

Localization for CA5BP1-CA5B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CA5BP1-CA5B Gene

Pathways & Interactions for CA5BP1-CA5B Gene

PathCards logo

SuperPathways for CA5BP1-CA5B Gene

No Data Available

Gene Ontology (GO) - Biological Process for CA5BP1-CA5B Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CA5BP1-CA5B Gene

Drugs & Compounds for CA5BP1-CA5B Gene

No Compound Related Data Available

Transcripts for CA5BP1-CA5B Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for CA5BP1-CA5B Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000E60A5D_9606 lncRNA 8116 1

RefSeq: NR_160544,

URS0000E60B18_9606 lncRNA 2486 1

RefSeq: NR_160545,

URS00008BD2C1_9606 lncRNA 659 3

LncBook: HSALNT0280470,

LNCipedia: lnc-CA5B-1:6,

NONCODE: NONHSAT136356.2,

URS00008BFBA3_9606 lncRNA 2160 2

LNCipedia: lnc-CA5B-1:3,

NONCODE: NONHSAT136354.2,

URS00008B2795_9606 lncRNA 1268 2

LNCipedia: lnc-CA5B-1:4,

NONCODE: NONHSAT136355.2,

CA5BP1-CA5B in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for CA5BP1-CA5B Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for CA5BP1-CA5B Gene

No ASD Table

Relevant External Links for CA5BP1-CA5B Gene

GeneLoc Exon Structure for
CA5BP1-CA5B

Expression for CA5BP1-CA5B Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CA5BP1-CA5B Gene

Orthologs for CA5BP1-CA5B Gene

No data available for Orthologs and Evolution for CA5BP1-CA5B Gene

Paralogs for CA5BP1-CA5B Gene

No data available for Paralogs for CA5BP1-CA5B Gene

Variants for CA5BP1-CA5B Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for CA5BP1-CA5B Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for CA5BP1-CA5B Gene

Disorders for CA5BP1-CA5B Gene

No disorders were found for CA5BP1-CA5B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CA5BP1-CA5B Gene

Publications for CA5BP1-CA5B Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for CA5BP1-CA5B Gene

Products for CA5BP1-CA5B Gene

Sources for CA5BP1-CA5B Gene