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CA5BP1 Gene(Pseudogene)

Carbonic Anhydrase 5B Pseudogene 1

GCID:
GC0XP015695
GIFtS:
23
Genes Participants
UDN Logo

Aliases for CA5BP1 Gene

Aliases for CA5BP1 Gene

  • Carbonic Anhydrase 5B Pseudogene 1 2 3 5
  • Carbonic Anhydrase VB Pseudogene 1 2 3
  • Carbonic Dehydratase 2 3
  • CA5BL 3 4
  • Similar To Carbonic Anhydrase VB, Mitochondrial Precursor 2
  • Carbonic Anhydrase VB Pseudogene 2
  • Carbonic Anhydrase VB-Like 2
  • CA-VB-Like Protein 4
  • PRO2325 3
  • CA5BP 3
  • CA5B 4

External Ids for CA5BP1 Gene

Previous HGNC Symbols for CA5BP1 Gene

  • CA5BL
  • CA5BP

Summaries for CA5BP1 Gene

GeneCards Summary for CA5BP1 Gene

CA5BP1 (Carbonic Anhydrase 5B Pseudogene 1) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include carbonate dehydratase activity.

Additional gene information for CA5BP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CA5BP1 Gene

Genomics for CA5BP1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for CA5BP1 Gene

Promoters and enhancers for CA5BP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH0XI015673 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.7 728 3.5 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 CA5BP1 CLTRN ENSG00000200620 AP1S2 PIGA ZRSR2 CA5B
GH0XI015789 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 12.7 +116.0 115976 2.6 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A ZNF2 YY1 POLR2B ZNF143 ZRSR2 CA5B CA5BP1 VEGFD GC0XP015773 AP1S2
GH0XI015748 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13.1 +77.3 77250 6.8 PKNOX1 KLF1 ZBTB6 KLF17 FEZF1 GATA3 ZSCAN5C ATF7 PRDM10 KLF7 CA5B ZRSR2 CA5BP1 PIGA CLTRN GC0XP015773 ENSG00000200620
GH0XI015737 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 12.5 +63.4 63381 2.2 HDGF PKNOX1 SIN3A YY1 GLIS2 ZNF143 KLF13 SP3 NCOA1 ZNF518A CA5B CLTRN CA5BP1 ENSG00000200620 VEGFD GC0XP015773
GH0XI015596 Promoter/Enhancer 1.2 EPDnew ENCODE 11.1 -75.3 -75322 6.7 SOX13 FOXA2 SAP130 JUN CEBPG RARA TEAD3 GATA3 NR2F6 HOMEZ ACE2 CLTRN PIR CA5BP1 CA5B GS1-594A7.3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CA5BP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CA5BP1 Gene

Genomic Locations for CA5BP1 Gene
chrX:15,674,916-15,703,724
(GRCh38/hg38)
Size:
28,809 bases
Orientation:
Plus strand
chrX:15,693,039-15,721,847
(GRCh37/hg19)

Genomic View for CA5BP1 Gene

Genes around CA5BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CA5BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CA5BP1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CA5BP1 Gene

Proteins for CA5BP1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for CA5BP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WTZ4-CA5BL_HUMAN
    Recommended name:
    Putative inactive carbonic anhydrase 5B-like protein
    Protein Accession:
    Q8WTZ4
    Secondary Accessions:
    • A6NEZ4

    Protein attributes for CA5BP1 Gene

    Size:
    195 amino acids
    Molecular mass:
    22622 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CA5BP1 Gene

Protein Expression for CA5BP1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for CA5BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CA5BP1 Gene

Domains & Families for CA5BP1 Gene

Protein Domains for CA5BP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CA5BP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8WTZ4

UniProtKB/Swiss-Prot:

CA5BL_HUMAN :
  • Belongs to the alpha-carbonic anhydrase family.
Family:
  • Belongs to the alpha-carbonic anhydrase family.
genes like me logo Genes that share domains with CA5BP1: view

No data available for Gene Families for CA5BP1 Gene

Function for CA5BP1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Gene Ontology (GO) - Molecular Function for CA5BP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004089 carbonate dehydratase activity IEA --
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with CA5BP1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CA5BP1 Gene

Localization for CA5BP1 Gene

Gene Ontology (GO) - Cellular Components for CA5BP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with CA5BP1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for CA5BP1 Gene

Pathways & Interactions for CA5BP1 Gene

SuperPathways for CA5BP1 Gene

PathCards logo More details on SuperPathways for CA5BP1
No Data Available

Interacting Proteins for CA5BP1 Gene

Gene Ontology (GO) - Biological Process for CA5BP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CA5BP1 Gene

Drugs & Compounds for CA5BP1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CA5BP1 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for CA5BP1 Gene

(4) Additional mRNA sequences :
(219) Selected AceView cDNA sequences:
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CA5BP1 Gene

Carbonic anhydrase VB pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CA5BP1 Gene

No ASD Table

Relevant External Links for CA5BP1 Gene

GeneLoc Exon Structure for
CA5BP1
ECgene alternative splicing isoforms for
CA5BP1

Expression for CA5BP1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CA5BP1 Gene

mRNA expression in normal human tissues for CA5BP1 Gene
mRNA expression by BioGPS for CA5BP1 GenemRNA expression by GTEx for CA5BP1 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CA5BP1 Gene



NURSA nuclear receptor signaling pathways regulating expression of CA5BP1 Gene:

CA5BP1

SOURCE GeneReport for Unigene cluster for CA5BP1 Gene:

Hs.732244
genes like me logo Genes that share expression patterns with CA5BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CA5BP1 Gene

Orthologs for CA5BP1 Gene

Evolution for CA5BP1 Gene

ENSEMBL:
Gene Tree for CA5BP1 (if available)
TreeFam:
Gene Tree for CA5BP1 (if available)

No data available for Orthologs for CA5BP1 Gene

Paralogs for CA5BP1 Gene

No data available for Paralogs for CA5BP1 Gene

Variants for CA5BP1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for CA5BP1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000151883 -- 15,683,503(+) A/C intron_variant
rs1000157641 -- 15,691,863(+) TTT/T intron_variant
rs1000188977 -- 15,678,905(+) T/C intron_variant
rs1000210335 -- 15,679,559(+) G/A intron_variant
rs1000319306 -- 15,687,199(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CA5BP1 Gene

Variant ID Type Subtype PubMed ID
esv2739978 CNV deletion 23290073
esv2758862 CNV loss 17122850

Additional Variant Information for CA5BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CA5BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CA5BP1 Gene

Disorders for CA5BP1 Gene

Additional Disease Information for CA5BP1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for CA5BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CA5BP1 Gene

Publications for CA5BP1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 4 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  5. Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G … Peterson K (Molecular vision 2002) 3 58

Products for CA5BP1 Gene

Sources for CA5BP1 Gene

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