CA5BP1 Gene (Pseudogene)

Carbonic Anhydrase 5B Pseudogene 1

GC0XP015677
GIFtS:
18
See more...

Aliases for CA5BP1 Gene

Aliases for CA5BP1 Gene

  • Carbonic Anhydrase 5B Pseudogene 1 2 3 5
  • Carbonic Anhydrase VB Pseudogene 1 2 3
  • Carbonic Dehydratase 2 3
  • PRO2325 2 3
  • CA5BL 3 4
  • Similar To Carbonic Anhydrase VB, Mitochondrial Precursor 2
  • Putative Inactive Carbonic Anhydrase 5B-Like Protein 4
  • Carbonic Anhydrase VB Pseudogene 2
  • Carbonic Anhydrase VB-Like 2
  • CA-VB-Like Protein 4
  • CA5BP1 5
  • CA5BP 3
  • CA5B 4

External Ids for CA5BP1 Gene

Previous HGNC Symbols for CA5BP1 Gene

  • CA5BL
  • CA5BP

Previous GeneCards Identifiers for CA5BP1 Gene

  • GC0XP015695
  • GC0XP015675

Summaries for CA5BP1 Gene

GeneCards Summary for CA5BP1 Gene

CA5BP1 (Carbonic Anhydrase 5B Pseudogene 1) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include carbonate dehydratase activity.

Additional gene information for CA5BP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for CA5BP1 Gene

Genomics for CA5BP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for CA5BP1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around CA5BP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for CA5BP1 Gene

Genomic Locations for CA5BP1 Gene
chrX:15,674,916-15,703,724
(GRCh38/hg38)
Size:
28,809 bases
Orientation:
Plus strand
chrX:15,693,039-15,721,847
(GRCh37/hg19)
Size:
28,809 bases
Orientation:
Plus strand

Genomic View for CA5BP1 Gene

Genes around CA5BP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CA5BP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CA5BP1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for CA5BP1 Gene

Proteins for CA5BP1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for CA5BP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WTZ4-CA5BL_HUMAN
    Recommended name:
    Putative inactive carbonic anhydrase 5B-like protein
    Protein Accession:
    Q8WTZ4
    Secondary Accessions:
    • A6NEZ4

    Protein attributes for CA5BP1 Gene

    Size:
    195 amino acids
    Molecular mass:
    22622 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CA5BP1 Gene

Protein Expression for CA5BP1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for CA5BP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CA5BP1 Gene

Domains & Families for CA5BP1 Gene

Protein Domains for CA5BP1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CA5BP1 Gene

GenScript: Design optimal peptide antigens:
  • CA-VB-like protein (CA5BL_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q8WTZ4

UniProtKB/Swiss-Prot:

CA5BL_HUMAN :
  • Belongs to the alpha-carbonic anhydrase family.
Family:
  • Belongs to the alpha-carbonic anhydrase family.
genes like me logo Genes that share domains with CA5BP1: view

No data available for Gene Families for CA5BP1 Gene

Function for CA5BP1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Gene Ontology (GO) - Molecular Function for CA5BP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004089 carbonate dehydratase activity IEA --
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with CA5BP1: view

Phenotypes for CA5BP1 Gene

GenomeRNAi human phenotypes for CA5BP1:
genes like me logo Genes that share phenotypes with CA5BP1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CA5BP1 Gene

Localization for CA5BP1 Gene

Gene Ontology (GO) - Cellular Components for CA5BP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with CA5BP1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for CA5BP1 Gene

Pathways & Interactions for CA5BP1 Gene

PathCards logo

SuperPathways for CA5BP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CA5BP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for CA5BP1 Gene

Drugs & Compounds for CA5BP1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for CA5BP1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for CA5BP1 Gene

5 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for CA5BP1 Gene

No ASD Table

Relevant External Links for CA5BP1 Gene

GeneLoc Exon Structure for
CA5BP1

Expression for CA5BP1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CA5BP1 Gene

mRNA expression in normal human tissues for CA5BP1 Gene
mRNA expression by BioGPS for CA5BP1 GenemRNA expression by GTEx for CA5BP1 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CA5BP1 Gene



Transcriptomic regulation report from SPP (The Signaling Pathways Project) for CA5BP1

SOURCE GeneReport for Unigene cluster for CA5BP1 Gene:

Hs.732244
genes like me logo Genes that share expression patterns with CA5BP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CA5BP1 Gene

Orthologs for CA5BP1 Gene

Evolution for CA5BP1 Gene

ENSEMBL:
Gene Tree for CA5BP1 (if available)
TreeFam:
Gene Tree for CA5BP1 (if available)

No data available for Orthologs for CA5BP1 Gene

Paralogs for CA5BP1 Gene

No data available for Paralogs for CA5BP1 Gene

Variants for CA5BP1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Structural Variations from Database of Genomic Variants (DGV) for CA5BP1 Gene

Variant ID Type Subtype PubMed ID
esv2739978 CNV deletion 23290073
esv2758862 CNV loss 17122850

Additional Variant Information for CA5BP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CA5BP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for CA5BP1 Gene

Disorders for CA5BP1 Gene

Additional Disease Information for CA5BP1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for CA5BP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CA5BP1 Gene

Publications for CA5BP1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
  5. Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G … Peterson K (Molecular vision 2002) 3

ExternalLinks

View latest publications for CA5BP1 gene in Mastermind

Products for CA5BP1 Gene

Sources for CA5BP1 Gene