Aliases for CA5AP1 Gene
Aliases for CA5AP1 Gene
External Ids for CA5AP1 Gene
- HGNC: 1379
- Entrez Gene: 764
- Ensembl: ENSG00000260133
Previous HGNC Symbols for CA5AP1 Gene
- CA5P
Summaries for CA5AP1 Gene
GeneCards Summary for CA5AP1 Gene
CA5AP1 (Carbonic Anhydrase 5A Pseudogene 1) is a Pseudogene.
Additional gene information for CA5AP1 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CA5AP1 Gene
Genomics for CA5AP1 Gene
GeneHancer (GH) Regulatory Elements for CA5AP1 Gene
Promoters and enhancers for CA5AP1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH16J029635 | Enhancer | 0.4 | Ensembl | 607.2 | +0.1 | 130 | 0.8 | MNT ZNF592 | CA5AP1 PIR32473 | |
| GH16J029638 | Enhancer | 0.2 | Ensembl | 600.7 | -1.8 | -1770 | 0.2 | CA5AP1 GC16M029645 | ||
| GH16J029598 | Promoter/Enhancer | 1.7 | Ensembl ENCODE dbSUPER | 7.9 | +33.5 | 33483 | 7 | HDGF ZNF652 ELF3 MNT ZNF121 CEBPG ZNF687 NCOA3 ZNF24 MAFK | CA5AP1 GDPD3 SPNS1 SLX1B PIR60561 LOC105371168 PIR61517 | |
| GH16J029611 | Promoter/Enhancer | 1.7 | Ensembl ENCODE dbSUPER | 7.8 | +22.6 | 22627 | 6.2 | SP1 MNT NKRF MLLT1 POLR2A GTF2F1 ZNF384 ZNF687 CDC5L MYC | PIR61517 SLC7A5P1 INO80E ATXN2L ENSG00000261766 ZNF764 NPIPB12 SH2B1 NPIPB13 SPNS1 | |
| GH16J029593 | Promoter/Enhancer | 1.7 | Ensembl ENCODE dbSUPER | 7.2 | +41.8 | 41830 | 4.2 | ZFX MNT ZNF148 NKRF POLR2A MLLT1 ZNF687 AHR MCM2 ZBTB7A | SMG1P2 ENSG00000279583 NFATC2IP ATXN2L ENSG00000260853 ENSG00000260367 SPNS1 SMG1P5 ZNF785 ENSG00000261766 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around CA5AP1 on UCSC Golden Path with GeneCards custom track
Genomic Locations for CA5AP1 Gene
Genomic Locations for CA5AP1 Gene
- chr16:29,618,675-29,636,331
- (GRCh38/hg38)
- Size:
- 17,657 bases
- Orientation:
- Minus strand
- chr16:29,630,106-29,648,664
- (GRCh37/hg19)
- Size:
- 18,559 bases
- Orientation:
- Minus strand
Genomic View for CA5AP1 Gene
Genes around CA5AP1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 16p11.2 by HGNC
- 16p11.2 by Entrez Gene
- 16p11.2 by Ensembl
CA5AP1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CA5AP1 Gene
Proteins for CA5AP1 Gene
Post-translational modifications for CA5AP1 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CA5AP1
- Origene Custom Protein Services for CA5AP1
No data available for DME Specific Peptides for CA5AP1 Gene
Domains & Families for CA5AP1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CA5AP1 Gene
Function for CA5AP1 Gene
Phenotypes From GWAS Catalog for CA5AP1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CA5AP1
-
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for CA5AP1 - Now 50% OFF >
- * CA5AP1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * CA5AP1 CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for CA5AP1
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for CA5AP1 - Now 50% OFF >
- * CA5AP1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * CA5AP1 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CA5AP1 Gene
Localization for CA5AP1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CA5AP1 Gene
Transcripts for CA5AP1 Gene
mRNA/cDNA for CA5AP1 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000568175 576 bps (ENST00000568175.1)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for CA5AP1 - Now 50% OFF >
- * CA5AP1 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * CA5AP1 CRISPR applications: KO, Activation, Repression, and more - Browse All
- Browse CRISPR knockouts for CA5AP1
miRNA Products
Inhibitory RNA Products
Clone Products
- Applied Biological Materials (abm): Clones for CA5AP1 - Now 50% OFF >
- * CA5AP1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * CA5AP1 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All
Expression for CA5AP1 Gene
mRNA differential expression in normal tissues according to GTEx for CA5AP1 Gene
This gene is overexpressed in Testis (x53.0).
NURSA nuclear receptor signaling pathways regulating expression of CA5AP1 Gene:
CA5AP1
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CA5AP1 Gene
Orthologs for CA5AP1 Gene
No data available for Orthologs for CA5AP1 Gene
Paralogs for CA5AP1 Gene
No data available for Paralogs for CA5AP1 Gene
Variants for CA5AP1 Gene
Additional Variant Information for CA5AP1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CA5AP1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CA5AP1 Gene
Disorders for CA5AP1 Gene
No disorders were found for CA5AP1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CA5AP1 Gene
Publications for CA5AP1 Gene
- Genomic organization of the human gene (CA5) and pseudogene for mitochondrial carbonic anhydrase V and their localization to chromosomes 16q and 16p. (PMID: 7490083) Nagao Y … Sly WS (Genomics 1995) 2 3 58
- Carbonic anhydrase inhibitors. Zonisamide is an effective inhibitor of the cytosolic isozyme II and mitochondrial isozyme V: solution and X-ray crystallographic studies. (PMID: 15837316) De Simone G … Supuran CT (Bioorganic & medicinal chemistry letters 2005) 3 58
ExternalLinks
Products for CA5AP1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for CA5AP1
- Origene Custom Protein Services for CA5AP1
- Browse OriGene Inhibitory RNA Products For CA5AP1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for CA5AP1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For CA5AP1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for CA5AP1
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for CA5AP1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for CA5AP1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for CA5AP1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for CA5AP1
Sources for CA5AP1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
- (149) GWAS Catalog
- (150) Monarch Initiative
- (151) DataMed
- (152) HumanCyc
- (153) genomics-online
- (154) UCNEbase
- (155) EPDnew
- (156) Applied Biosystems
- (157) GlyConnect
- (158) Aminode
- (159) GeneCopoeia
- (160) GPS-Prot
- (161) RNACentral
- (162) LncRNADisease
- (163) LOVD
- (164) miR2Disease
- (165) DiseaseEnhancer
- (166) Boster Bio
- (167) Biorbyt
- (168) Biocompare
- (169) Mastermind