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Aliases for CA3-AS1 Gene

Subcategory (RNA class) for CA3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CA3-AS1 Gene

  • CA3 Antisense RNA 1 2 3 5

External Ids for CA3-AS1 Gene

Summaries for CA3-AS1 Gene

GeneCards Summary for CA3-AS1 Gene

CA3-AS1 (CA3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CA3-AS1 include Hepatocellular Carcinoma.

Additional gene information for CA3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CA3-AS1 Gene

Genomics for CA3-AS1 Gene

GeneHancer (GH) Regulatory Elements for CA3-AS1 Gene

Promoters and enhancers for CA3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J085462 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 661.7 +1.0 1038 2.2 ARID4B SIN3A IRF4 ZNF48 YY1 CBX5 ZNF143 SP3 RXRA REST CA3-AS1 CA2 GC08P085464 GC08P085466 CA1
GH08J085465 Promoter 0.5 Ensembl 650.7 -0.2 -186 0.2 CA2 CA3-AS1 GC08P085464 GC08P085466 GC08P085480 GC08P085481
GH08J085466 Enhancer 0.3 FANTOM5 650.7 -1.4 -1370 0.3 CA3-AS1 CA2 LRRCC1 GC08P085480 GC08P085481
GH08J085958 Enhancer 1.2 ENCODE dbSUPER 10.5 -494.6 -494609 2.4 HDGF PKNOX1 ATF1 ARNT NCOA2 ZNF280A TCF12 ZNF766 GATA2 E2F8 CA2 CA3-AS1 ATP6V0D2 LOC105375622
GH08J085437 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 11.4 +26.8 26780 1.7 JUND REST CA3 CA2 CA3-AS1 CA1 LRRCC1 GC08P085382
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CA3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CA3-AS1 Gene

Genomic Locations for CA3-AS1 Gene
chr8:85,441,806-85,464,915
(GRCh38/hg38)
Size:
23,110 bases
Orientation:
Minus strand
chr8:86,354,080-86,377,144
(GRCh37/hg19)

Genomic View for CA3-AS1 Gene

Genes around CA3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CA3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CA3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CA3-AS1 Gene

Function for CA3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CA3-AS1 Gene

Localization for CA3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CA3-AS1 Gene

Pathways & Interactions for CA3-AS1 Gene

SuperPathways for CA3-AS1 Gene

No Data Available

Interacting Proteins for CA3-AS1 Gene

Gene Ontology (GO) - Biological Process for CA3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CA3-AS1 Gene

Drugs & Compounds for CA3-AS1 Gene

No Compound Related Data Available

Transcripts for CA3-AS1 Gene

mRNA/cDNA for CA3-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(7) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for CA3-AS1 Gene

No ASD Table

Relevant External Links for CA3-AS1 Gene

GeneLoc Exon Structure for
CA3-AS1
ECgene alternative splicing isoforms for
CA3-AS1

Expression for CA3-AS1 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CA3-AS1 Gene

Orthologs for CA3-AS1 Gene

Evolution for CA3-AS1 Gene

ENSEMBL:
Gene Tree for CA3-AS1 (if available)
TreeFam:
Gene Tree for CA3-AS1 (if available)

No data available for Orthologs for CA3-AS1 Gene

Paralogs for CA3-AS1 Gene

No data available for Paralogs for CA3-AS1 Gene

Variants for CA3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CA3-AS1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs11261477 benign, Osteopetrosis with renal tubular acidosis 85,463,901(-) A/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs118203931 pathogenic, CARBONIC ANHYDRASE II VARIANT 85,465,289(-) A/C/G upstream_transcript_variant
rs118203934 pathogenic, Osteopetrosis with renal tubular acidosis 85,465,357(-) T/G upstream_transcript_variant
rs557422827 uncertain-significance, Osteopetrosis with renal tubular acidosis 85,463,944(-) G/A genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs570970117 uncertain-significance, Osteopetrosis with renal tubular acidosis 85,463,952(-) C/A/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant

Additional Variant Information for CA3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CA3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CA3-AS1 Gene

Disorders for CA3-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CA3-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
hepatocellular carcinoma
  • hcc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for CA3-AS1

genes like me logo Genes that share disorders with CA3-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CA3-AS1 Gene

Publications for CA3-AS1 Gene

  1. Downregulation of LncRNA-RP11-317J10.2 promotes cell proliferation and invasion and predicts poor prognosis in colorectal cancer. (PMID: 29073791) Luo J … Huang Y (Scandinavian journal of gastroenterology 2018) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for CA3-AS1 Gene

Sources for CA3-AS1 Gene

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