Aliases for C9orf92 Gene

Data sources for C9orf92 Gene:

RNA type for C9orf92 Gene

lncRNA

Aliases for C9orf92 Gene

External Ids for C9orf92 Gene

Previous GeneCards Identifiers for C9orf92 Gene

  • GC09U900592

Summaries for C9orf92 Gene

GeneCards Summary for C9orf92 Gene

C9orf92 (Chromosome 9 Open Reading Frame 92) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C9orf92 Gene

Genomics for C9orf92 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for C9orf92 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J016343 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 11.5 +67.1 67089 5.4 JUND EP300 RAD21 STAT3 MYC POLR2A BCL6B NFE2L2 RXRA NR2F2 C9orf92 HSALNG0070197 HSALNG0070196 HSALNG0070198 BNC2 CCDC171
GH09J016314 Enhancer 1 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.6 +94.9 94874 3.4 YY1 RXRA JUND HNF4A EGR1 ATF3 SP1 C9orf92 SNAPC3 HSALNG0070195 HSALNG0070180-005 BNC2 CCDC171
GH09J016571 Enhancer 1.1 UCNEbase Ensembl ENCODE 9.8 -161.2 -161241 1.9 FEZF1 ZNF843 SCRT1 SP7 GATA2 ZXDB OSR2 RAD21 POLR2A SP1 ENSG00000230694 C9orf92 piR-35002-136 ENSG00000231756 BNC2
GH09J016308 Enhancer 0.8 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.8 +101.0 101002 2.8 ATF2 EZH2 C9orf92 CNTLN HSALNG0070195 HSALNG0070180-005 BNC2 CCDC171
GH09J016509 Enhancer 0.9 FANTOM5 Ensembl ENCODE 10.3 -99.4 -99411 2.4 JUND BATF MAFK IKZF1 POLR2A FOS IKZF2 EP300 ENSG00000231756 C9orf92 piR-35002-136 BNC2 CCDC171
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C9orf92 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for C9orf92

Genomic Locations for C9orf92 Gene

Latest Assembly
chr9:16,203,935-16,410,990
(GRCh38/hg38)
Size:
207,056 bases
Orientation:
Minus strand

Previous Assembly
chr9:16,203,933-16,276,311
(GRCh37/hg19 by Entrez Gene)
Size:
72,379 bases
Orientation:
Minus strand

chr9:16,203,933-16,276,311
(GRCh37/hg19 by Ensembl)
Size:
72,379 bases
Orientation:
Minus strand

Genomic View for C9orf92 Gene

Genes around C9orf92 on UCSC Golden Path with GeneCards custom track
C9orf92 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
C9orf92 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C9orf92 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf92 Gene

Proteins for C9orf92 Gene

  • Protein details for C9orf92 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NGG3-CI092_HUMAN
    Recommended name:
    Putative uncharacterized protein C9orf92
    Protein Accession:
    A6NGG3
    Secondary Accessions:
    • A6NMF8

    Protein attributes for C9orf92 Gene

    Size:
    77 amino acids
    Molecular mass:
    8520 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C9orf92 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C9orf92 Gene

Post-translational modifications for C9orf92 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C9orf92 Gene

Domains & Families for C9orf92 Gene

Gene Families for C9orf92 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for C9orf92 Gene

InterPro:
genes like me logo Genes that share domains with C9orf92: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C9orf92 Gene

Function for C9orf92 Gene

Phenotypes From GWAS Catalog for C9orf92 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C9orf92 Gene

Localization for C9orf92 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C9orf92 gene
Compartment Confidence
extracellular 2
nucleus 2
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C9orf92 Gene

Pathways & Interactions for C9orf92 Gene

PathCards logo

SuperPathways for C9orf92 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C9orf92 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C9orf92 Gene

Drugs & Compounds for C9orf92 Gene

No Compound Related Data Available

Transcripts for C9orf92 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for C9orf92 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000DB9E82_9606 lncRNA 379 2

RefSeq: NR_171034,

Ensembl: ENST00000380685 (view in UCSC) ,

URS0000DBAAB2_9606 lncRNA 392 1

Ensembl: ENST00000648575 (view in UCSC) ,

URS0000DB7675_9606 lncRNA 359 1

Ensembl: ENST00000433347 (view in UCSC) ,

C9orf92 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for C9orf92 Gene

2 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C9orf92

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf92 Gene

No ASD Table

Relevant External Links for C9orf92 Gene

GeneLoc Exon Structure for
C9orf92

Expression for C9orf92 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C9orf92 Gene

mRNA differential expression in normal tissues according to GTEx for C9orf92 Gene

This gene is overexpressed in Prostate (x7.8).

SOURCE GeneReport for Unigene cluster for C9orf92 Gene:

Hs.586441
genes like me logo Genes that share expression patterns with C9orf92: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C9orf92 Gene

Orthologs for C9orf92 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C9orf92 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia LOC465004 29
  • 98.15 (n)
C9orf92 30
  • 97 (a)
OneToOne
Species where no ortholog for C9orf92 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for C9orf92 Gene

ENSEMBL:
Gene Tree for C9orf92 (if available)
TreeFam:
Gene Tree for C9orf92 (if available)
Alliance of Genome Resources:
Additional Orthologs for C9orf92

Paralogs for C9orf92 Gene

No data available for Paralogs for C9orf92 Gene

Variants for C9orf92 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for C9orf92 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for C9orf92 Gene

Variant ID Type Subtype PubMed ID
esv3619808 CNV loss 21293372
nsv520183 CNV loss 19592680
nsv523890 CNV loss 19592680
nsv6490 CNV insertion 18451855

Variation tolerance for C9orf92 Gene

Gene Damage Index Score: 2.82; 47.78% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C9orf92 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C9orf92
Leiden Open Variation Database (LOVD)
C9orf92

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for C9orf92 Gene

Disorders for C9orf92 Gene

Additional Disease Information for C9orf92

No disorders were found for C9orf92 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C9orf92 Gene

Publications for C9orf92 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 4
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 4
  3. Fusion of the HMGA2 and C9orf92 genes in myolipoma with t(9;12)(p22;q14). (PMID: 26857357) Panagopoulos I … Heim S (Diagnostic pathology 2016) 3

Products for C9orf92 Gene

Sources for C9orf92 Gene