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Aliases for C9orf41-AS1 Gene

Subcategory (RNA class) for C9orf41-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C9orf41-AS1 Gene

  • C9orf41 Antisense RNA 1 2 3 5

External Ids for C9orf41-AS1 Gene

Summaries for C9orf41-AS1 Gene

GeneCards Summary for C9orf41-AS1 Gene

C9orf41-AS1 (C9orf41 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for C9orf41-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf41-AS1 Gene

Genomics for C9orf41-AS1 Gene

GeneHancer (GH) Regulatory Elements for C9orf41-AS1 Gene

Promoters and enhancers for C9orf41-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I074951 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 550.8 -0.1 -122 3.3 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 E2F8 ZNF143 C9orf40 C9orf41-AS1 NMRK1 OSTF1 CARNMT1 TRPM6 RNU6-445P LOC100133316
GH09I074235 Enhancer 0.3 dbSUPER 5.1 -716.3 -716282 1.5 MAFK C9orf41-AS1 PIR60276 LOC101927329
GH09I074250 Enhancer 0.2 dbSUPER 5.1 -700.8 -700762 3.4 RORB C9orf41-AS1 LOC101927329 PIR60276
GH09I074239 Enhancer 0.2 dbSUPER 5.1 -712.3 -712270 2 RORB C9orf41-AS1 PIR60276 LOC101927329
GH09I074263 Enhancer 0.2 dbSUPER 5.1 -688.7 -688685 1.3 RORB C9orf41-AS1 LOC101927329 PIR60276
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C9orf41-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C9orf41-AS1 Gene

Genomic Locations for C9orf41-AS1 Gene
chr9:74,952,965-74,997,382
(GRCh38/hg38)
Size:
44,418 bases
Orientation:
Plus strand
chr9:77,567,884-77,611,209
(GRCh37/hg19)

Genomic View for C9orf41-AS1 Gene

Genes around C9orf41-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C9orf41-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C9orf41-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf41-AS1 Gene

Proteins for C9orf41-AS1 Gene

Post-translational modifications for C9orf41-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C9orf41-AS1 Gene

Domains & Families for C9orf41-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C9orf41-AS1 Gene

Function for C9orf41-AS1 Gene

Phenotypes From GWAS Catalog for C9orf41-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C9orf41-AS1 Gene

Localization for C9orf41-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C9orf41-AS1 Gene

Pathways & Interactions for C9orf41-AS1 Gene

SuperPathways for C9orf41-AS1 Gene

No Data Available

Interacting Proteins for C9orf41-AS1 Gene

Gene Ontology (GO) - Biological Process for C9orf41-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C9orf41-AS1 Gene

Drugs & Compounds for C9orf41-AS1 Gene

No Compound Related Data Available

Transcripts for C9orf41-AS1 Gene

mRNA/cDNA for C9orf41-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf41-AS1 Gene

No ASD Table

Relevant External Links for C9orf41-AS1 Gene

GeneLoc Exon Structure for
C9orf41-AS1
ECgene alternative splicing isoforms for
C9orf41-AS1

Expression for C9orf41-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C9orf41-AS1 Gene

genes like me logo Genes that share expression patterns with C9orf41-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C9orf41-AS1 Gene

Orthologs for C9orf41-AS1 Gene

Evolution for C9orf41-AS1 Gene

ENSEMBL:
Gene Tree for C9orf41-AS1 (if available)
TreeFam:
Gene Tree for C9orf41-AS1 (if available)

No data available for Orthologs for C9orf41-AS1 Gene

Paralogs for C9orf41-AS1 Gene

No data available for Paralogs for C9orf41-AS1 Gene

Variants for C9orf41-AS1 Gene

Sequence variations from dbSNP and Humsavar for C9orf41-AS1 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000047801 -- 74,952,848(+) C/G upstream_transcript_variant
rs1000099920 -- 74,952,683(+) C/A upstream_transcript_variant
rs1000239867 -- 74,971,995(+) C/T intron_variant
rs1000264492 -- 74,978,416(+) G/A intron_variant
rs1000296806 -- 74,978,284(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C9orf41-AS1 Gene

Variant ID Type Subtype PubMed ID
esv988386 CNV insertion 20482838
nsv507518 OTHER sequence alteration 20534489
nsv509303 CNV insertion 20534489
nsv982307 CNV duplication 23825009

Additional Variant Information for C9orf41-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C9orf41-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C9orf41-AS1 Gene

Disorders for C9orf41-AS1 Gene

Additional Disease Information for C9orf41-AS1

No disorders were found for C9orf41-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C9orf41-AS1 Gene

Publications for C9orf41-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for C9orf41-AS1 Gene

Sources for C9orf41-AS1 Gene

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