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Aliases for C9orf147 Gene

Aliases for C9orf147 Gene

  • Chromosome 9 Open Reading Frame 147 2 3 5
  • Uncharacterized Protein LOC100133204 3

External Ids for C9orf147 Gene

Previous GeneCards Identifiers for C9orf147 Gene

  • GC09U900870
  • GC09M114286
  • GC09M115241
  • GC09M115198

Summaries for C9orf147 Gene

GeneCards Summary for C9orf147 Gene

C9orf147 (Chromosome 9 Open Reading Frame 147) is a Protein Coding gene.

Additional gene information for C9orf147 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf147 Gene

Genomics for C9orf147 Gene

GeneHancer (GH) Regulatory Elements for C9orf147 Gene

Promoters and enhancers for C9orf147 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J112485 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 600.7 +1.8 1771 6.6 SP1 ZFX CC2D1A ELF3 CBFA2T2 NKRF POLR2A MLLT1 CEBPG GTF2F1 C9orf147 KIAA1958 HSDL2 INIP ENSG00000226609 SNX30
GH09J112793 Enhancer 0.9 Ensembl ENCODE 11.2 -302.5 -302451 1.4 CTCF PRDM1 RAD21 PRDM10 ZNF143 REST TRIM22 CTBP1 SMARCA5 MAX ENSG00000226609 SNX30 INIP KIAA1958 C9orf147 PIR49803
GH09J112447 Enhancer 0.8 Ensembl ENCODE 12.1 +44.0 43952 3.4 IKZF1 PKNOX1 ZNF316 SCRT2 NFE2 FOXK2 DPF2 ZFP91 VEZF1 ZEB2 HSDL2 KIAA1958 C9orf147 INIP ENSG00000226609 SNX30 SUSD1 PIR60820
GH09J112788 Enhancer 0.7 Ensembl ENCODE 11.2 -298.1 -298147 5.2 IKZF1 CTBP1 DPF2 CUX1 GATA3 CTCF JUND SLC46A2 ENSG00000226609 SNX30 INIP C9orf147 KIAA1958 PIR49803
GH09J112794 Enhancer 0.4 Ensembl 11.2 -305.5 -305548 2.8 CEBPG ZSCAN4 CEBPB ENSG00000226609 SNX30 INIP C9orf147 KIAA1958 PIR49803
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C9orf147 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the C9orf147 gene promoter:
  • AML1a
  • C/EBPalpha
  • FOXD1
  • HNF-3beta
  • Pax-6
  • POU2F1
  • POU2F1a
  • RORalpha1
  • XBP-1

Genomic Locations for C9orf147 Gene

Genomic Locations for C9orf147 Gene
chr9:112,433,816-112,490,453
(GRCh38/hg38)
Size:
56,638 bases
Orientation:
Minus strand
chr9:115,196,096-115,254,860
(GRCh37/hg19)
Size:
58,765 bases
Orientation:
Minus strand

Genomic View for C9orf147 Gene

Genes around C9orf147 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C9orf147 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C9orf147 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf147 Gene

Proteins for C9orf147 Gene

Post-translational modifications for C9orf147 Gene

No Post-translational modifications

Other Protein References for C9orf147 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C9orf147 Gene

Domains & Families for C9orf147 Gene

Suggested Antigen Peptide Sequences for C9orf147 Gene

GenScript: Design optimal peptide antigens:
  • Chromosome 9 open reading frame 147 (A2A387_HUMAN)

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for C9orf147 Gene

Function for C9orf147 Gene

Phenotypes From GWAS Catalog for C9orf147 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C9orf147 Gene

Localization for C9orf147 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C9orf147 Gene

Pathways & Interactions for C9orf147 Gene

PathCards logo

SuperPathways for C9orf147 Gene

No Data Available

Interacting Proteins for C9orf147 Gene

Gene Ontology (GO) - Biological Process for C9orf147 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C9orf147 Gene

Drugs & Compounds for C9orf147 Gene

No Compound Related Data Available

Transcripts for C9orf147 Gene

mRNA/cDNA for C9orf147 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(4) RNA Central transcripts :

Unigene Clusters for C9orf147 Gene

Chromosome 9 open reading frame 147:
Representative Sequences:

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf147 Gene

No ASD Table

Relevant External Links for C9orf147 Gene

GeneLoc Exon Structure for
C9orf147
ECgene alternative splicing isoforms for
C9orf147

Expression for C9orf147 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C9orf147 Gene

mRNA differential expression in normal tissues according to GTEx for C9orf147 Gene

This gene is overexpressed in Stomach (x15.2), Adrenal Gland (x6.8), and Ovary (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of C9orf147 Gene:

C9orf147

SOURCE GeneReport for Unigene cluster for C9orf147 Gene:

Hs.662552
genes like me logo Genes that share expression patterns with C9orf147: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C9orf147 Gene

Orthologs for C9orf147 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C9orf147 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9orf147 35
  • 98 (a)
OneToOne
Species where no ortholog for C9orf147 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C9orf147 Gene

ENSEMBL:
Gene Tree for C9orf147 (if available)
TreeFam:
Gene Tree for C9orf147 (if available)

Paralogs for C9orf147 Gene

No data available for Paralogs for C9orf147 Gene

Variants for C9orf147 Gene

Sequence variations from dbSNP and Humsavar for C9orf147 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000013126 -- 112,462,725(-) A/G intron_variant
rs1000019981 -- 112,469,983(-) T/C intron_variant
rs1000364572 -- 112,463,224(-) G/T intron_variant
rs1000380039 -- 112,482,203(-) G/C intron_variant
rs1000498375 -- 112,455,546(-) G/C/T intron_variant

Additional Variant Information for C9orf147 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C9orf147

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C9orf147 Gene

Disorders for C9orf147 Gene

Additional Disease Information for C9orf147

No disorders were found for C9orf147 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C9orf147 Gene

Publications for C9orf147 Gene

No publications were found for C9orf147 Gene.

Products for C9orf147 Gene

Sources for C9orf147 Gene

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