Aliases for C9orf135-DT Gene

Subcategory (RNA class) for C9orf135-DT Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for C9orf135-DT Gene

  • C9orf135 Divergent Transcript 2 3 5
  • C9orf135 Antisense RNA 1 (Head To Head) 2 3
  • C9orf135-DT 2 168
  • NONHSAG052518 92
  • HSALNG0071760 167
  • C9orf135-AS1 3

External Ids for C9orf135-DT Gene

Previous HGNC Symbols for C9orf135-DT Gene

  • C9orf135-AS1

Summaries for C9orf135-DT Gene

GeneCards Summary for C9orf135-DT Gene

C9orf135-DT (C9orf135 Divergent Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for C9orf135-DT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C9orf135-DT Gene

Genomics for C9orf135-DT Gene

GeneHancer (GH) Regulatory Elements for C9orf135-DT Gene

Promoters and enhancers for C9orf135-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J069820 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 500.7 0.0 -28 1.2 ZNF217 TCF12 USF1 SIX5 SAP30 RFX1 HCFC1 DEAF1 CREB3L1 ETS1 C9orf135 C9orf135-DT piR-37026-618
GH09J069822 Enhancer 0.5 ENCODE 500.7 -1.8 -1787 0.2 MYNN PBX2 GLIS1 MEIS2 CTCF PKNOX1 C9orf135 C9orf135-DT piR-37026-618
GH09J069819 Enhancer 0.3 Ensembl 505.2 +1.6 1572 0.4 FEZF1 PKNOX1 C9orf135-DT C9orf135 lnc-PTAR1-1
GH09J069798 Enhancer 0.5 Ensembl 11.7 +21.9 21872 0.2 ATF2 CREB1 JUND ATF3 FOS JUN ATF7 piR-49423-280 PTAR1 C9orf135 C9orf135-DT piR-57460-679 LOC105376076
GH09J069800 Enhancer 0.4 Ensembl 11.7 +20.7 20672 0.2 TCF12 ZBTB33 KLF1 CBFA2T2 CBFA2T3 piR-49423-280 PTAR1 C9orf135 C9orf135-DT piR-57460-679
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C9orf135-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for C9orf135-DT Gene

Genomic Locations for C9orf135-DT Gene
chr9:69,818,367-69,820,773
(GRCh38/hg38)
Size:
2,407 bases
Orientation:
Minus strand
chr9:72,433,899-72,435,655
(GRCh37/hg19)
Size:
1,757 bases
Orientation:
Minus strand

Genomic View for C9orf135-DT Gene

Genes around C9orf135-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C9orf135-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C9orf135-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf135-DT Gene

Proteins for C9orf135-DT Gene

Post-translational modifications for C9orf135-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for C9orf135-DT Gene

Domains & Families for C9orf135-DT Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C9orf135-DT Gene

Function for C9orf135-DT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C9orf135-DT Gene

Localization for C9orf135-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C9orf135-DT Gene

Pathways & Interactions for C9orf135-DT Gene

PathCards logo

SuperPathways for C9orf135-DT Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for C9orf135-DT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C9orf135-DT Gene

Drugs & Compounds for C9orf135-DT Gene

No Compound Related Data Available

Transcripts for C9orf135-DT Gene

mRNA/cDNA for C9orf135-DT Gene

13 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
1 LncBook transcripts :
9 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf135-DT Gene

No ASD Table

Relevant External Links for C9orf135-DT Gene

GeneLoc Exon Structure for
C9orf135-DT

Expression for C9orf135-DT Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C9orf135-DT

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C9orf135-DT Gene

Orthologs for C9orf135-DT Gene

Evolution for C9orf135-DT Gene

ENSEMBL:
Gene Tree for C9orf135-DT (if available)
TreeFam:
Gene Tree for C9orf135-DT (if available)

No data available for Orthologs for C9orf135-DT Gene

Paralogs for C9orf135-DT Gene

No data available for Paralogs for C9orf135-DT Gene

Variants for C9orf135-DT Gene

Additional dbSNP identifiers (rs#s) for C9orf135-DT Gene

Structural Variations from Database of Genomic Variants (DGV) for C9orf135-DT Gene

Variant ID Type Subtype PubMed ID
nsv6552 CNV insertion 18451855
nsv831611 CNV gain 17160897

Additional Variant Information for C9orf135-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C9orf135-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for C9orf135-DT Gene

Disorders for C9orf135-DT Gene

Additional Disease Information for C9orf135-DT

No disorders were found for C9orf135-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C9orf135-DT Gene

Publications for C9orf135-DT Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for C9orf135-DT Gene

Products for C9orf135-DT Gene

Sources for C9orf135-DT Gene