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Aliases for C9orf106 Gene

Subcategory (RNA class) for C9orf106 Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for C9orf106 Gene

  • Chromosome 9 Open Reading Frame 106 (Putative) 2 3 5
  • Chromosome 9 Open Reading Frame 106 2

External Ids for C9orf106 Gene

Previous GeneCards Identifiers for C9orf106 Gene

  • GC09U900597
  • GC09P129163
  • GC09P131123
  • GC09P132083
  • GC09P101689

Summaries for C9orf106 Gene

GeneCards Summary for C9orf106 Gene

C9orf106 (Chromosome 9 Open Reading Frame 106 (Putative)) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for C9orf106 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C9orf106 Gene

Genomics for C9orf106 Gene

GeneHancer (GH) Regulatory Elements for C9orf106 Gene

Promoters and enhancers for C9orf106 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I129317 Promoter/Enhancer 1.9 Ensembl ENCODE dbSUPER 550.8 -0.2 -194 7.2 FOXA2 PKNOX1 ARID4B SIN3A ZNF48 YY1 ETS1 GATA2 ZNF207 ZNF143 C9orf106 IER5L LOC105376289 ENSG00000273186 SH3GLB2 LOC101929331
GH09I129476 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +168.3 168304 26.1 CLOCK FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC NUP188 GLE1 TOR1B PKN3 ENSG00000234055 LINC00963 C9orf106 ENSG00000268707 IER5L CRAT
GH09I129342 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 6.1 +24.4 24385 6 FOXA2 MLX ARID4B DMAP1 ZNF48 TCF12 SLC30A9 FOS RXRA SP5 IER5L LOC105376289 NTMT1 C9orf50 LINC01503 C9orf106 CERCAM C9orf78 TOR1B RN7SL159P
GH09I129457 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 3.6 +138.8 138832 4.4 HDGF FOXA2 ARID4B SIN3A YBX1 DMAP1 YY1 ZNF766 ZNF143 FOS LOC101929314 SPOUT1 LOC101929270 NTMT1 C9orf50 NUP188 LINC00963 USP20 C9orf106 ASB6
GH09I129380 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 3.9 +61.7 61749 4.6 PKNOX1 CLOCK RB1 NEUROD1 SIN3A ZBTB7B RAD21 GLIS2 ZNF143 RCOR1 NTMT1 C9orf50 ENDOG GLE1 USP20 C9orf106 C9orf78 MIGA2 TOR1B ASB6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C9orf106 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the C9orf106 gene promoter:

Genomic Locations for C9orf106 Gene

Genomic Locations for C9orf106 Gene
chr9:129,321,016-129,324,905
(GRCh38/hg38)
Size:
3,890 bases
Orientation:
Plus strand
chr9:132,083,295-132,087,184
(GRCh37/hg19)

Genomic View for C9orf106 Gene

Genes around C9orf106 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C9orf106 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C9orf106 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C9orf106 Gene

Proteins for C9orf106 Gene

  • Protein details for C9orf106 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NAJ2-CI106_HUMAN
    Recommended name:
    Putative uncharacterized protein C9orf106
    Protein Accession:
    Q8NAJ2

    Protein attributes for C9orf106 Gene

    Size:
    232 amino acids
    Molecular mass:
    25113 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C9orf106 Gene

Post-translational modifications for C9orf106 Gene

No Post-translational modifications

Other Protein References for C9orf106 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C9orf106 Gene

Domains & Families for C9orf106 Gene

Protein Domains for C9orf106 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C9orf106 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C9orf106: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C9orf106 Gene

Function for C9orf106 Gene

Phenotypes From GWAS Catalog for C9orf106 Gene

Phenotypes for C9orf106 Gene

GenomeRNAi human phenotypes for C9orf106:
genes like me logo Genes that share phenotypes with C9orf106: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C9orf106 Gene

Localization for C9orf106 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C9orf106 Gene

Pathways & Interactions for C9orf106 Gene

SuperPathways for C9orf106 Gene

No Data Available

Interacting Proteins for C9orf106 Gene

Selected Interacting proteins: Q8NAJ2-CI106_HUMAN for C9orf106 Gene via IID

Symbol External ID(s) Details
PDE9A
PSMA3

Gene Ontology (GO) - Biological Process for C9orf106 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C9orf106 Gene

Drugs & Compounds for C9orf106 Gene

No Compound Related Data Available

Transcripts for C9orf106 Gene

mRNA/cDNA for C9orf106 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C9orf106 Gene

Chromosome 9 open reading frame 106:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C9orf106 Gene

No ASD Table

Relevant External Links for C9orf106 Gene

GeneLoc Exon Structure for
C9orf106
ECgene alternative splicing isoforms for
C9orf106

Expression for C9orf106 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C9orf106 Gene

NURSA nuclear receptor signaling pathways regulating expression of C9orf106 Gene:

C9orf106

SOURCE GeneReport for Unigene cluster for C9orf106 Gene:

Hs.449434
genes like me logo Genes that share expression patterns with C9orf106: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C9orf106 Gene

Orthologs for C9orf106 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C9orf106 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9H9orf106 33
  • 98.85 (n)
Species where no ortholog for C9orf106 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C9orf106 Gene

ENSEMBL:
Gene Tree for C9orf106 (if available)
TreeFam:
Gene Tree for C9orf106 (if available)

Paralogs for C9orf106 Gene

No data available for Paralogs for C9orf106 Gene

Variants for C9orf106 Gene

Sequence variations from dbSNP and Humsavar for C9orf106 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000330090 -- 129,319,707(+) A/G upstream_transcript_variant
rs1000396857 -- 129,319,471(+) C/T upstream_transcript_variant
rs1000935511 -- 129,320,712(+) G/A/T upstream_transcript_variant
rs1001066860 -- 129,322,752(+) A/G downstream_transcript_variant
rs1001801632 -- 129,320,540(+) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for C9orf106 Gene

Variant ID Type Subtype PubMed ID
nsv527231 CNV loss 19592680
nsv6726 CNV insertion 18451855

Additional Variant Information for C9orf106 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C9orf106

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C9orf106 Gene

Disorders for C9orf106 Gene

Additional Disease Information for C9orf106

No disorders were found for C9orf106 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C9orf106 Gene

Publications for C9orf106 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  4. Pharmacogenomic study of side-effects for antidepressant treatment options in STAR*D. (PMID: 22041458) Clark SL … van den Oord EJ (Psychological medicine 2012) 44 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for C9orf106 Gene

Sources for C9orf106 Gene

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