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Aliases for C8orf34-AS1 Gene

Subcategory (RNA class) for C8orf34-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C8orf34-AS1 Gene

  • C8orf34 Antisense RNA 1 2 3 5

External Ids for C8orf34-AS1 Gene

Summaries for C8orf34-AS1 Gene

GeneCards Summary for C8orf34-AS1 Gene

C8orf34-AS1 (C8orf34 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for C8orf34-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C8orf34-AS1 Gene

Genomics for C8orf34-AS1 Gene

GeneHancer (GH) Regulatory Elements for C8orf34-AS1 Gene

Promoters and enhancers for C8orf34-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I068330 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 556.1 +0.6 612 1.6 PKNOX1 ZSCAN4 KLF17 MZF1 GLI4 ZEB1 ZNF335 ZNF213 ZNF391 EGR2 C8orf34-AS1 C8orf34
GH08I068256 Enhancer 0.5 Ensembl ENCODE 10.9 +74.6 74573 0.2 CEBPB C8orf34 C8orf34-AS1 GC08P068234 RPL31P40
GH08I068257 Enhancer 0.5 Ensembl 10.9 +73.8 73790 0.2 CTCF PRDM6 ARNT MAFG NFE2 FEZF1 ZIC2 C8orf34 C8orf34-AS1 GC08P068234 RPL31P40
GH08I068229 Enhancer 0.5 Ensembl ENCODE 10.5 +101.5 101549 1.8 BACH1 C8orf34 C8orf34-AS1 GC08P068234 ENSG00000252210 PREX2
GH08I068182 Enhancer 0.5 FANTOM5 10.3 +149.3 149276 0.2 ZNF316 CREB1 MAFG NFE2 C8orf34 C8orf34-AS1 ENSG00000254051 ENSG00000252210 PREX2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C8orf34-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C8orf34-AS1 Gene

Genomic Locations for C8orf34-AS1 Gene
chr8:68,303,468-68,331,491
(GRCh38/hg38)
Size:
28,024 bases
Orientation:
Minus strand
chr8:69,215,703-69,243,726
(GRCh37/hg19)

Genomic View for C8orf34-AS1 Gene

Genes around C8orf34-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C8orf34-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C8orf34-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C8orf34-AS1 Gene

Proteins for C8orf34-AS1 Gene

Post-translational modifications for C8orf34-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C8orf34-AS1 Gene

Domains & Families for C8orf34-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C8orf34-AS1 Gene

Function for C8orf34-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C8orf34-AS1 Gene

Localization for C8orf34-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C8orf34-AS1 Gene

Pathways & Interactions for C8orf34-AS1 Gene

SuperPathways for C8orf34-AS1 Gene

No Data Available

Interacting Proteins for C8orf34-AS1 Gene

Gene Ontology (GO) - Biological Process for C8orf34-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C8orf34-AS1 Gene

Drugs & Compounds for C8orf34-AS1 Gene

No Compound Related Data Available

Transcripts for C8orf34-AS1 Gene

mRNA/cDNA for C8orf34-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C8orf34-AS1 Gene

No ASD Table

Relevant External Links for C8orf34-AS1 Gene

GeneLoc Exon Structure for
C8orf34-AS1
ECgene alternative splicing isoforms for
C8orf34-AS1

Expression for C8orf34-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C8orf34-AS1 Gene

genes like me logo Genes that share expression patterns with C8orf34-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C8orf34-AS1 Gene

Orthologs for C8orf34-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C8orf34-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 94 (a)
OneToOne
Species where no ortholog for C8orf34-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C8orf34-AS1 Gene

ENSEMBL:
Gene Tree for C8orf34-AS1 (if available)
TreeFam:
Gene Tree for C8orf34-AS1 (if available)

Paralogs for C8orf34-AS1 Gene

No data available for Paralogs for C8orf34-AS1 Gene

Variants for C8orf34-AS1 Gene

Sequence variations from dbSNP and Humsavar for C8orf34-AS1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000067266 -- 68,304,646(-) T/C non_coding_transcript_variant
rs1000170072 -- 68,324,861(-) C/T intron_variant
rs1000371109 -- 68,329,279(-) A/G intron_variant
rs1000552278 -- 68,321,417(-) C/T intron_variant
rs1000604814 -- 68,321,088(-) A/G intron_variant

Additional Variant Information for C8orf34-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C8orf34-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C8orf34-AS1 Gene

Disorders for C8orf34-AS1 Gene

Additional Disease Information for C8orf34-AS1

No disorders were found for C8orf34-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C8orf34-AS1 Gene

Publications for C8orf34-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for C8orf34-AS1 Gene

Sources for C8orf34-AS1 Gene

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