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Aliases for C7orf13 Gene

Subcategory (RNA class) for C7orf13 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for C7orf13 Gene

  • Chromosome 7 Open Reading Frame 13 3
  • MY040 3

External Ids for C7orf13 Gene

Previous GeneCards Identifiers for C7orf13 Gene

  • GC07M154661
  • GC07M155733
  • GC07M155848
  • GC07M155930
  • GC07M156124
  • GC07M156431
  • GC07M150163
  • GC07M156266

Summaries for C7orf13 Gene

GeneCards Summary for C7orf13 Gene

C7orf13 (Chromosome 7 Open Reading Frame 13) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for C7orf13 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C7orf13 Gene

Genomics for C7orf13 Gene

GeneHancer (GH) Regulatory Elements for C7orf13 Gene

Promoters and enhancers for C7orf13 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I156638 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 583.4 +0.2 205 3.4 SMAD1 ARNT SIN3A YY1 POLR2B ZNF766 E2F8 ZNF143 SP3 REST C7orf13 RNF32 PIR39241 LINC01006 GC07M156641
GH07I156661 Enhancer 0.7 ENCODE 36.1 -21.7 -21659 1 ATF1 TEAD4 TAL1 PYGO2 TCF12 GATA2 NCOR1 EGR1 CBFA2T2 TRIM24 C7orf13 LINC01006 RNF32 LOC101927858 GC07M156670
GH07I156665 Enhancer 0.8 ENCODE 28.4 -26.6 -26581 4.1 PKNOX1 FOXA2 ZFP64 ARID4B ZSCAN9 RARA FOS CREM HMG20B SP5 C7orf13 LINC01006 RNF32 GC07M156670 LOC101927858 LMBR1
GH07I156891 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 9.6 -252.4 -252372 2.9 HDGF SMAD1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B LMBR1 LOC102723795 NOM1 C7orf13 RNU4-31P
GH07I156614 Enhancer 1.4 FANTOM5 Ensembl ENCODE 10 +24.7 24669 4 PKNOX1 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 YY1 ATF7 RXRA LINC01006 RNF32 C7orf13 NOM1 MNX1 GC07P156625 GC07M156563
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C7orf13 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the C7orf13 gene promoter:

Genomic Locations for C7orf13 Gene

Genomic Locations for C7orf13 Gene
chr7:156,638,366-156,640,654
(GRCh38/hg38)
Size:
2,289 bases
Orientation:
Minus strand
chr7:156,431,057-156,433,348
(GRCh37/hg19)

Genomic View for C7orf13 Gene

Genes around C7orf13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C7orf13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C7orf13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C7orf13 Gene

Proteins for C7orf13 Gene

  • Protein details for C7orf13 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q9H3I6
    Recommended name:
    Brain my040 protein
    Protein Accession:
    Q9H3I6

    Protein attributes for C7orf13 Gene

    Size:
    88 amino acids
    Molecular mass:
    9541 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C7orf13 Gene

Post-translational modifications for C7orf13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C7orf13 Gene

Domains & Families for C7orf13 Gene

Protein Domains for C7orf13 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C7orf13 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C7orf13: view

No data available for Gene Families and UniProtKB/Swiss-Prot for C7orf13 Gene

Function for C7orf13 Gene

Phenotypes for C7orf13 Gene

GenomeRNAi human phenotypes for C7orf13:
genes like me logo Genes that share phenotypes with C7orf13: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C7orf13 Gene

Localization for C7orf13 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C7orf13 gene
Compartment Confidence
plasma membrane 3
nucleus 2
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for C7orf13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C7orf13: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for C7orf13 Gene

Pathways & Interactions for C7orf13 Gene

SuperPathways for C7orf13 Gene

No Data Available

Interacting Proteins for C7orf13 Gene

Gene Ontology (GO) - Biological Process for C7orf13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C7orf13 Gene

Drugs & Compounds for C7orf13 Gene

No Compound Related Data Available

Transcripts for C7orf13 Gene

Unigene Clusters for C7orf13 Gene

Chromosome 7 open reading frame 13:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C7orf13 Gene

No ASD Table

Relevant External Links for C7orf13 Gene

GeneLoc Exon Structure for
C7orf13

Expression for C7orf13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C7orf13 Gene

Protein differential expression in normal tissues from HIPED for C7orf13 Gene

This gene is overexpressed in Testis (28.0), Stomach (10.6), Uterus (6.7), Ovary (6.0), and Lung (6.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for C7orf13 Gene



SOURCE GeneReport for Unigene cluster for C7orf13 Gene:

Hs.647014
genes like me logo Genes that share expression patterns with C7orf13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C7orf13 Gene

Orthologs for C7orf13 Gene

No data available for Orthologs and Evolution for C7orf13 Gene

Paralogs for C7orf13 Gene

No data available for Paralogs for C7orf13 Gene

Variants for C7orf13 Gene

Sequence variations from dbSNP and Humsavar for C7orf13 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000311672 -- 156,639,803(-) G/A non_coding_transcript_variant
rs1000846412 -- 156,638,850(-) T/C non_coding_transcript_variant
rs1000958889 -- 156,638,582(-) C/T non_coding_transcript_variant
rs1001017318 -- 156,638,079(-) T/G downstream_transcript_variant
rs1001046383 -- 156,638,333(-) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for C7orf13 Gene

Variant ID Type Subtype PubMed ID
esv3615671 CNV loss 21293372
nsv1023469 CNV gain 25217958
nsv831198 CNV loss 17160897

Variation tolerance for C7orf13 Gene

Gene Damage Index Score: 8.46; 85.76% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C7orf13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C7orf13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C7orf13 Gene

Disorders for C7orf13 Gene

Additional Disease Information for C7orf13

No disorders were found for C7orf13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C7orf13 Gene

Publications for C7orf13 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 58
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 58
  4. A double RING-H2 domain in RNF32, a gene expressed during sperm formation. (PMID: 11890671) van Baren MJ … Heutink P (Biochemical and biophysical research communications 2002) 58

Products for C7orf13 Gene

Sources for C7orf13 Gene

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