Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C6orf229 Gene

Aliases for C6orf229 Gene

  • Chromosome 6 Open Reading Frame 229 2 3 5

External Ids for C6orf229 Gene

Summaries for C6orf229 Gene

GeneCards Summary for C6orf229 Gene

C6orf229 (Chromosome 6 Open Reading Frame 229) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include binding.

Additional gene information for C6orf229 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C6orf229 Gene

Genomics for C6orf229 Gene

GeneHancer (GH) Regulatory Elements for C6orf229 Gene

Promoters and enhancers for C6orf229 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I024799 Enhancer 0.7 FANTOM5 550.8 -0.9 -885 0.4 HDAC1 MEIS2 SOX13 PKNOX1 AFF1 TFE3 NFIA RXRA SAP130 NR2F1 C6orf229 GMNN ALDH5A1 DCDC2 GPLD1 ENSG00000282804
GH06I024798 Promoter 0.5 EPDnew 550.8 0.0 -37 0.1 C6orf229 ENSG00000282804
GH06I024773 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 +22.8 22832 4.8 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 SLC30A9 ZNF213 E2F8 SP3 GMNN NUP50P2 ENSG00000272402 C6orf229
GH06I024803 Enhancer 0.7 ENCODE 0.8 -4.7 -4692 0.2 SOX13 FOXA2 SAP130 ZNF384 DNMT3B RARA TEAD3 SMARCC2 NR2F6 FOS RIPOR2 C6orf229 ENSG00000282804
GH06I024802 Enhancer 0.7 ENCODE 0.8 -4.0 -4011 0.4 SCRT1 SOX13 GATAD2A HLF CEBPB ZNF384 CEBPG HMG20A TEAD3 SCRT2 C6orf62 C6orf229 ENSG00000282804
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C6orf229 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C6orf229 Gene

Genomic Locations for C6orf229 Gene
chr6:24,797,321-24,798,896
(GRCh38/hg38)
Size:
1,576 bases
Orientation:
Minus strand
chr6:24,797,549-24,799,117
(GRCh37/hg19)

Genomic View for C6orf229 Gene

Genes around C6orf229 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C6orf229 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C6orf229 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf229 Gene

Proteins for C6orf229 Gene

  • Protein details for C6orf229 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    H3BNL8-CF229_HUMAN
    Recommended name:
    Uncharacterized protein C6orf229
    Protein Accession:
    H3BNL8

    Protein attributes for C6orf229 Gene

    Size:
    230 amino acids
    Molecular mass:
    26547 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C6orf229 Gene

Post-translational modifications for C6orf229 Gene

No Post-translational modifications

Other Protein References for C6orf229 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C6orf229 Gene

Domains & Families for C6orf229 Gene

Gene Families for C6orf229 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C6orf229 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C6orf229: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C6orf229 Gene

Function for C6orf229 Gene

Phenotypes From GWAS Catalog for C6orf229 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C6orf229 Gene

Localization for C6orf229 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C6orf229 Gene

Pathways & Interactions for C6orf229 Gene

SuperPathways for C6orf229 Gene

No Data Available

Interacting Proteins for C6orf229 Gene

Gene Ontology (GO) - Biological Process for C6orf229 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C6orf229 Gene

Drugs & Compounds for C6orf229 Gene

No Compound Related Data Available

Transcripts for C6orf229 Gene

mRNA/cDNA for C6orf229 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf229 Gene

No ASD Table

Relevant External Links for C6orf229 Gene

GeneLoc Exon Structure for
C6orf229
ECgene alternative splicing isoforms for
C6orf229

Expression for C6orf229 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C6orf229 Gene

mRNA differential expression in normal tissues according to GTEx for C6orf229 Gene

This gene is overexpressed in Testis (x32.3) and Whole Blood (x12.4).

NURSA nuclear receptor signaling pathways regulating expression of C6orf229 Gene:

C6orf229
genes like me logo Genes that share expression patterns with C6orf229: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C6orf229 Gene

Orthologs for C6orf229 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C6orf229 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC101057982 33
  • 99.28 (n)
dog
(Canis familiaris)
Mammalia LOC102152999 33
  • 81.01 (n)
C6orf229 34
  • 67 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LOC101904023 33
  • 80.49 (n)
rat
(Rattus norvegicus)
Mammalia LOC102548126 33
  • 66.82 (n)
mouse
(Mus musculus)
Mammalia 1700016G14Rik 33 16
  • 65.88 (n)
oppossum
(Monodelphis domestica)
Mammalia C6orf229 34
  • 40 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia C6orf229 34
  • 35 (a)
OneToOne
Species where no ortholog for C6orf229 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C6orf229 Gene

ENSEMBL:
Gene Tree for C6orf229 (if available)
TreeFam:
Gene Tree for C6orf229 (if available)

Paralogs for C6orf229 Gene

No data available for Paralogs for C6orf229 Gene

Variants for C6orf229 Gene

Sequence variations from dbSNP and Humsavar for C6orf229 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000866145 -- 24,799,807(-) T/G upstream_transcript_variant
rs1000918408 -- 24,800,312(-) T/C upstream_transcript_variant
rs1001420887 -- 24,796,913(-) C/T downstream_transcript_variant
rs1003311780 -- 24,799,236(-) G/T upstream_transcript_variant
rs1004439993 -- 24,797,988(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C6orf229 Gene

Variant ID Type Subtype PubMed ID
nsv508396 CNV deletion 20534489
nsv5227 CNV deletion 18451855
nsv830609 CNV gain 17160897

Variation tolerance for C6orf229 Gene

Gene Damage Index Score: 5.34; 70.75% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C6orf229 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C6orf229

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C6orf229 Gene

Disorders for C6orf229 Gene

Additional Disease Information for C6orf229

No disorders were found for C6orf229 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C6orf229 Gene

Publications for C6orf229 Gene

  1. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 4 58

Products for C6orf229 Gene

Sources for C6orf229 Gene

Content
Loading form....