Aliases for C6orf58 Gene

Aliases for C6orf58 Gene

  • Chromosome 6 Open Reading Frame 58 2 3 5
  • Liver Enriched Gene 1 Homolog 2 3
  • Protein LEG1 Homolog 3 4
  • LEG1 2 3
  • UPF0762 Protein C6orf58 3
  • C6orf58 5

External Ids for C6orf58 Gene

Previous GeneCards Identifiers for C6orf58 Gene

  • GC06U900113
  • GC06P127941
  • GC06P127840
  • GC06P125474

Summaries for C6orf58 Gene

GeneCards Summary for C6orf58 Gene

C6orf58 (Chromosome 6 Open Reading Frame 58) is a Protein Coding gene. Diseases associated with C6orf58 include Sparganosis.

UniProtKB/Swiss-Prot Summary for C6orf58 Gene

Additional gene information for C6orf58 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C6orf58 Gene

Genomics for C6orf58 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for C6orf58 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J127340 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 606.5 -176.3 -176328 5.3 BRCA1 GATAD2A TEAD4 PRDM10 ZNF629 TFE3 SOX13 IKZF1 NFKBIZ ZNF692 ECHDC1 C6orf58 LOC107986641 lnc-RNF146-3 KIAA0408 piR-48348-066 LOC105377994 RNF146
GH06J127514 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -2.5 -2454 6.4 CTCF PRDM10 ZNF629 REST TFE3 ZNF692 LARP7 PRDM1 ZIC2 POLR2A C6orf58 ENSG00000255330 lnc-KIAA0408-2 KIAA0408 YWHAZP4 SOGA3 LOC107986642
GH06J127577 Promoter 0.4 EPDnew 611.3 +57.7 57700 0.1 SPI1 C6orf58 piR-32461-169 THEMIS
GH06J127481 Enhancer 1 ENCODE dbSUPER 20.4 -36.1 -36141 4 TEAD4 PRDM10 ZNF629 KDM1A ZNF692 ZNF7 PRDM1 RELA POLR2A ZNF600 C6orf58 KIAA0408 SOGA3 ENSG00000255330 ECHDC1 piR-31249 LOC107986642
GH06J127299 Enhancer 1 Ensembl ENCODE dbSUPER 6.5 -218.2 -218154 5.8 CREB1 CTCF ATF7 FOXA1 REST RAD21 TRIM22 ARID3A CEBPB SMC3 ECHDC1 KIAA0408 C6orf58 RF00994-953 lnc-RNF146-1 lnc-KIAA0408-4 RNF146
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C6orf58 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for C6orf58

Top Transcription factor binding sites by QIAGEN in the C6orf58 gene promoter:
  • aMEF-2
  • AREB6
  • MEF-2A
  • NF-kappaB1
  • Pax-4a
  • RelA
  • SRY
  • TBP
  • TFIID

Genomic Locations for C6orf58 Gene

Genomic Locations for C6orf58 Gene
chr6:127,519,455-127,591,820
(GRCh38/hg38)
Size:
72,366 bases
Orientation:
Plus strand
chr6:127,840,600-127,912,962
(GRCh37/hg19)
Size:
72,363 bases
Orientation:
Plus strand

Genomic View for C6orf58 Gene

Genes around C6orf58 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C6orf58 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C6orf58 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C6orf58 Gene

Proteins for C6orf58 Gene

  • Protein details for C6orf58 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6P5S2-LEG1H_HUMAN
    Recommended name:
    Protein LEG1 homolog
    Protein Accession:
    Q6P5S2
    Secondary Accessions:
    • B4E1I0
    • Q5VUP2

    Protein attributes for C6orf58 Gene

    Size:
    330 amino acids
    Molecular mass:
    37926 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C6orf58 Gene

Post-translational modifications for C6orf58 Gene

  • Glycosylation at Asn24 and Asn69
  • Modification sites at PhosphoSitePlus

Other Protein References for C6orf58 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C6orf58 Gene

Domains & Families for C6orf58 Gene

Gene Families for C6orf58 Gene

Human Protein Atlas (HPA):
  • Predicted secreted proteins

Protein Domains for C6orf58 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C6orf58 Gene

GenScript: Design optimal peptide antigens:
  • UPF0762 protein C6orf58 (CF058_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q6P5S2

UniProtKB/Swiss-Prot:

LEG1H_HUMAN :
  • Belongs to the LEG1 family.
Family:
  • Belongs to the LEG1 family.
genes like me logo Genes that share domains with C6orf58: view

Function for C6orf58 Gene

Molecular function for C6orf58 Gene

UniProtKB/Swiss-Prot Function:
May be involved in early liver development.

Phenotypes From GWAS Catalog for C6orf58 Gene

genes like me logo Genes that share phenotypes with C6orf58: view

Animal Model Products

CRISPR Products

miRNA for C6orf58 Gene

miRTarBase miRNAs that target C6orf58

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C6orf58

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C6orf58 Gene

Localization for C6orf58 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C6orf58 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C6orf58 gene
Compartment Confidence
extracellular 5
plasma membrane 1
cytoskeleton 1
mitochondrion 1
nucleus 1
lysosome 1

Gene Ontology (GO) - Cellular Components for C6orf58 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005615 extracellular space IBA,IDA 25645918
GO:0070062 extracellular exosome HDA 19056867
genes like me logo Genes that share ontologies with C6orf58: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for C6orf58 Gene

Pathways & Interactions for C6orf58 Gene

PathCards logo

SuperPathways for C6orf58 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C6orf58 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007275 multicellular organism development IEA --
genes like me logo Genes that share ontologies with C6orf58: view

No data available for Pathways by source and SIGNOR curated interactions for C6orf58 Gene

Drugs & Compounds for C6orf58 Gene

No Compound Related Data Available

Transcripts for C6orf58 Gene

mRNA/cDNA for C6orf58 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C6orf58

Alternative Splicing Database (ASD) splice patterns (SP) for C6orf58 Gene

No ASD Table

Relevant External Links for C6orf58 Gene

GeneLoc Exon Structure for
C6orf58

Expression for C6orf58 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C6orf58 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

  • Lung (Respiratory System)
  • Larynx (Respiratory System)

mRNA differential expression in normal tissues according to GTEx for C6orf58 Gene

This gene is overexpressed in Minor Salivary Gland (x51.9).

Protein differential expression in normal tissues from HIPED for C6orf58 Gene

This gene is overexpressed in Pancreatic juice (36.5), Saliva (16.9), and Skin (12.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C6orf58 Gene



Protein tissue co-expression partners for C6orf58 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C6orf58

SOURCE GeneReport for Unigene cluster for C6orf58 Gene:

Hs.226268

mRNA Expression by UniProt/SwissProt for C6orf58 Gene:

Q6P5S2-LEG1H_HUMAN
Tissue specificity: Detected in saliva and in hypomineralized dental enamel (at protein level).

Evidence on tissue expression from TISSUES for C6orf58 Gene

  • Saliva(4.2)
  • Intestine(2.9)
  • Skin(2.7)
  • Stomach(2.6)
genes like me logo Genes that share expression patterns with C6orf58: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for C6orf58 Gene

Orthologs for C6orf58 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C6orf58 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia C6orf58 31
  • 100 (a)
OneToOne
C6H6orf58 30
  • 99.49 (n)
Dog
(Canis familiaris)
Mammalia C1H6orf58 30
  • 79.39 (n)
C6orf58 31
  • 68 (a)
OneToOne
Cow
(Bos Taurus)
Mammalia C6orf58 31
  • 64 (a)
OneToOne
Mouse
(Mus musculus)
Mammalia 2310057J18Rik 31
  • 53 (a)
OneToOne
Oppossum
(Monodelphis domestica)
Mammalia C6orf58 31
  • 46 (a)
OneToOne
Platypus
(Ornithorhynchus anatinus)
Mammalia C6orf58 31
  • 45 (a)
OneToOne
Chicken
(Gallus gallus)
Aves C6orf58 31
  • 34 (a)
OneToOne
Lizard
(Anolis carolinensis)
Reptilia C6orf58 31
  • 38 (a)
OneToOne
Zebrafish
(Danio rerio)
Actinopterygii C20H6orf58 (1 of 2) 31
  • 30 (a)
OneToMany
C20H6orf58 (2 of 2) 31
  • 29 (a)
OneToMany
Species where no ortholog for C6orf58 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for C6orf58 Gene

ENSEMBL:
Gene Tree for C6orf58 (if available)
TreeFam:
Gene Tree for C6orf58 (if available)

Paralogs for C6orf58 Gene

Pseudogenes.org Pseudogenes for C6orf58 Gene

genes like me logo Genes that share paralogs with C6orf58: view

No data available for Paralogs for C6orf58 Gene

Variants for C6orf58 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for C6orf58 Gene

SNP ID Clinical significance and condition Chr 06 pos Variation AA Info Type
rs9491833 - p.Cys308Gly

Additional dbSNP identifiers (rs#s) for C6orf58 Gene

Structural Variations from Database of Genomic Variants (DGV) for C6orf58 Gene

Variant ID Type Subtype PubMed ID
nsv1024149 CNV loss 25217958
nsv5469 CNV insertion 18451855
nsv830798 CNV loss 17160897

Variation tolerance for C6orf58 Gene

Residual Variation Intolerance Score: 68.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.26; 40.56% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C6orf58 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C6orf58

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C6orf58 Gene

Disorders for C6orf58 Gene

MalaCards: The human disease database

(1) MalaCards diseases for C6orf58 Gene - From: DISEASES

Disorder Aliases PubMed IDs
sparganosis
  • infection by sparganum
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with C6orf58: view

No data available for UniProtKB/Swiss-Prot and Genatlas for C6orf58 Gene

Publications for C6orf58 Gene

  1. Liver-Enriched Gene 1, a Glycosylated Secretory Protein, Binds to FGFR and Mediates an Anti-stress Pathway to Protect Liver Development in Zebrafish. (PMID: 26901320) Hu M … Peng J (PLoS genetics 2016) 2 3
  2. Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry. (PMID: 16740002) Ramachandran P … Loo JA (Journal of proteome research 2006) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall AJ … Beck S (Nature 2003) 3 4
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3

Products for C6orf58 Gene

  • Biorbyt antibodies for C6orf58

Sources for C6orf58 Gene