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Aliases for C5orf67 Gene

Aliases for C5orf67 Gene

  • Chromosome 5 Open Reading Frame 67 2 3 5

External Ids for C5orf67 Gene

Summaries for C5orf67 Gene

GeneCards Summary for C5orf67 Gene

C5orf67 (Chromosome 5 Open Reading Frame 67) is a Protein Coding gene.

Additional gene information for C5orf67 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C5orf67 Gene

Genomics for C5orf67 Gene

GeneHancer (GH) Regulatory Elements for C5orf67 Gene

Promoters and enhancers for C5orf67 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I056607 Enhancer 1.1 FANTOM5 Ensembl ENCODE 550.8 -2.0 -1963 1.2 SCRT1 BACH1 MAFG SCRT2 VEZF1 NFE2 MYC ZBTB12 PRDM1 NFE2L2 C5orf67 LINC01948 MAP3K1 ENSG00000228650
GH05I056606 Promoter 0.5 EPDnew 550.8 0.0 -42 0.1 C5orf67 LINC01948 ENSG00000228650
GH05I056668 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 18 -64.1 -64051 3.5 PKNOX1 SMAD1 NEUROD1 BMI1 IRF4 ATF7 ETV6 RCOR1 BCLAF1 IKZF2 C5orf67 MAP3K1 LINC01948 RNU6ATAC2P LOC105378978 ENSG00000228650
GH05I056636 Enhancer 1.5 FANTOM5 Ensembl ENCODE 11.1 -32.0 -31983 3.5 PKNOX1 FOXA2 ZFP64 ARID4B FEZF1 ZNF2 YY1 ZNF213 SP3 SP5 MIER3 C5orf67 LINC01948 MAP3K1 ENSG00000228650
GH05I056814 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 6.6 -210.5 -210527 6.3 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 YY1 MAP3K1 SETD9 ENSG00000271828 MIER3 C5orf67 GC05P056845 GC05P056846
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C5orf67 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C5orf67 Gene

Genomic Locations for C5orf67 Gene
chr5:56,511,394-56,606,232
(GRCh38/hg38)
Size:
94,839 bases
Orientation:
Minus strand
chr5:55,807,394-55,902,059
(GRCh37/hg19)

Genomic View for C5orf67 Gene

Genes around C5orf67 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C5orf67 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C5orf67 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C5orf67 Gene

Proteins for C5orf67 Gene

  • Protein details for C5orf67 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    F2Z3F1-CE067_HUMAN
    Recommended name:
    Uncharacterized protein C5orf67
    Protein Accession:
    F2Z3F1

    Protein attributes for C5orf67 Gene

    Size:
    127 amino acids
    Molecular mass:
    14123 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C5orf67 Gene

Post-translational modifications for C5orf67 Gene

No Post-translational modifications

Other Protein References for C5orf67 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C5orf67 Gene

Domains & Families for C5orf67 Gene

Gene Families for C5orf67 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C5orf67 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C5orf67: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C5orf67 Gene

Function for C5orf67 Gene

Phenotypes From GWAS Catalog for C5orf67 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C5orf67 Gene

Localization for C5orf67 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C5orf67 Gene

Pathways & Interactions for C5orf67 Gene

SuperPathways for C5orf67 Gene

No Data Available

Interacting Proteins for C5orf67 Gene

Gene Ontology (GO) - Biological Process for C5orf67 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C5orf67 Gene

Drugs & Compounds for C5orf67 Gene

No Compound Related Data Available

Transcripts for C5orf67 Gene

mRNA/cDNA for C5orf67 Gene

(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C5orf67 Gene

No ASD Table

Relevant External Links for C5orf67 Gene

GeneLoc Exon Structure for
C5orf67
ECgene alternative splicing isoforms for
C5orf67

Expression for C5orf67 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C5orf67 Gene

NURSA nuclear receptor signaling pathways regulating expression of C5orf67 Gene:

C5orf67
genes like me logo Genes that share expression patterns with C5orf67: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C5orf67 Gene

Orthologs for C5orf67 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C5orf67 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 100 (a)
OneToMany
-- 34
  • 100 (a)
OneToMany
Species where no ortholog for C5orf67 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C5orf67 Gene

ENSEMBL:
Gene Tree for C5orf67 (if available)
TreeFam:
Gene Tree for C5orf67 (if available)

Paralogs for C5orf67 Gene

No data available for Paralogs for C5orf67 Gene

Variants for C5orf67 Gene

Sequence variations from dbSNP and Humsavar for C5orf67 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000007693 -- 56,604,158(-) C/T genic_upstream_transcript_variant, intron_variant
rs1000024354 -- 56,528,052(-) A/T intron_variant
rs1000044769 -- 56,522,743(-) A/T intron_variant
rs1000056508 -- 56,557,238(-) T/C intron_variant
rs1000103479 -- 56,603,966(-) T/A genic_upstream_transcript_variant, intron_variant

Additional Variant Information for C5orf67 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C5orf67

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C5orf67 Gene

Disorders for C5orf67 Gene

Additional Disease Information for C5orf67

No disorders were found for C5orf67 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C5orf67 Gene

Publications for C5orf67 Gene

  1. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J … Rubin EM (Nature 2004) 3 4 58
  2. Genome-wide association analyses identify 18 new loci associated with serum urate concentrations. (PMID: 23263486) Köttgen A … Gieger C (Nature genetics 2013) 3 58
  3. Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits. (PMID: 23754948) Randall JC … Heid IM (PLoS genetics 2013) 3 58
  4. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) Willer CJ … Global Lipids Genetics Consortium (Nature genetics 2013) 3 58
  5. Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits. (PMID: 24204828) Zheng JS … Lai CQ (PloS one 2013) 3 58

Products for C5orf67 Gene

Sources for C5orf67 Gene

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