Aliases for C5orf66-AS2 Gene

Subcategory (RNA class) for C5orf66-AS2 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for C5orf66-AS2 Gene

  • C5orf66 Antisense RNA 2 2 3 5
  • C5orf66-AS2 2 168
  • HSALNG0045020 167
  • NONHSAG041605 92
  • CTC-349C3.2 3

External Ids for C5orf66-AS2 Gene

Previous GeneCards Identifiers for C5orf66-AS2 Gene

  • GC05M134572

Summaries for C5orf66-AS2 Gene

GeneCards Summary for C5orf66-AS2 Gene

C5orf66-AS2 (C5orf66 Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for C5orf66-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C5orf66-AS2 Gene

Genomics for C5orf66-AS2 Gene

GeneHancer (GH) Regulatory Elements for C5orf66-AS2 Gene

Promoters and enhancers for C5orf66-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J135249 Enhancer 1.1 Ensembl ENCODE dbSUPER 500.7 -1.5 -1522 1 MYC CTBP1 JUN CREB3L1 FOSL1 MYNN ZNF592 EHMT2 ZBTB48 DPF2 C5orf66-AS2 lnc-H2AFY-2 lnc-CATSPER3-3 C5orf66
GH05J135225 Enhancer 0.8 Ensembl dbSUPER 12 +22.7 22678 4.6 CTBP1 RBM25 CEBPG SPI1 MITF ETV1 UBTF ZMYM3 ZC3H8 GATA1 C5orf66-AS2 CATSPER3 piR-56037-012 C5orf66
GH05J135222 Enhancer 0.8 Ensembl ENCODE dbSUPER 11.9 +26.6 26578 2 FOSL1 POLR2A USF2 RAD51 C5orf66-AS2 piR-56037-012 C5orf66
GH05J135218 Enhancer 0.7 Ensembl ENCODE dbSUPER 11.9 +28.9 28899 1.4 NFIC NFIB C5orf66-AS2 piR-56037-012 C5orf66
GH05J135214 Enhancer 0.7 Ensembl dbSUPER 11.3 +32.6 32578 2.4 RBM25 CEBPG BCOR ZNF146 CEBPB ZMYM3 ZFP36 MAX KDM1A IKZF1 C5orf66-AS2 piR-56037-012 C5orf66
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C5orf66-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C5orf66-AS2 Gene

Genomic Locations for C5orf66-AS2 Gene
chr5:135,236,233-135,248,179
(GRCh38/hg38)
Size:
11,947 bases
Orientation:
Minus strand
chr5:134,571,924-134,583,869
(GRCh37/hg19)
Size:
11,946 bases
Orientation:
Minus strand

Genomic View for C5orf66-AS2 Gene

Genes around C5orf66-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C5orf66-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C5orf66-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C5orf66-AS2 Gene

Proteins for C5orf66-AS2 Gene

Post-translational modifications for C5orf66-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C5orf66-AS2 Gene

Domains & Families for C5orf66-AS2 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C5orf66-AS2 Gene

Function for C5orf66-AS2 Gene

Phenotypes From GWAS Catalog for C5orf66-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C5orf66-AS2 Gene

Localization for C5orf66-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C5orf66-AS2 Gene

Pathways & Interactions for C5orf66-AS2 Gene

PathCards logo

SuperPathways for C5orf66-AS2 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for C5orf66-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C5orf66-AS2 Gene

Drugs & Compounds for C5orf66-AS2 Gene

No Compound Related Data Available

Transcripts for C5orf66-AS2 Gene

mRNA/cDNA for C5orf66-AS2 Gene

6 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
4 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for C5orf66-AS2 Gene

No ASD Table

Relevant External Links for C5orf66-AS2 Gene

GeneLoc Exon Structure for
C5orf66-AS2

Expression for C5orf66-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C5orf66-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for C5orf66-AS2 Gene

This gene is overexpressed in Testis (x25.5), Pituitary (x9.6), and Esophagus - Mucosa (x5.0).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C5orf66-AS2

genes like me logo Genes that share expression patterns with C5orf66-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C5orf66-AS2 Gene

Orthologs for C5orf66-AS2 Gene

Evolution for C5orf66-AS2 Gene

ENSEMBL:
Gene Tree for C5orf66-AS2 (if available)
TreeFam:
Gene Tree for C5orf66-AS2 (if available)

No data available for Orthologs for C5orf66-AS2 Gene

Paralogs for C5orf66-AS2 Gene

No data available for Paralogs for C5orf66-AS2 Gene

Variants for C5orf66-AS2 Gene

Additional dbSNP identifiers (rs#s) for C5orf66-AS2 Gene

Structural Variations from Database of Genomic Variants (DGV) for C5orf66-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv830496 CNV gain 17160897

Additional Variant Information for C5orf66-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C5orf66-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for C5orf66-AS2 Gene

Disorders for C5orf66-AS2 Gene

Additional Disease Information for C5orf66-AS2

No disorders were found for C5orf66-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C5orf66-AS2 Gene

Publications for C5orf66-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 54
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 54
  3. Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis. (PMID: 19240791) Graubert TA … Walter MJ (PloS one 2009) 3 54

No data available for Mastermind for C5orf66-AS2 Gene

Products for C5orf66-AS2 Gene

Sources for C5orf66-AS2 Gene