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Aliases for C5orf66-AS2 Gene

Subcategory (RNA class) for C5orf66-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for C5orf66-AS2 Gene

  • C5orf66 Antisense RNA 2 2 3 5
  • CTC-349C3.2 3

External Ids for C5orf66-AS2 Gene

Previous GeneCards Identifiers for C5orf66-AS2 Gene

  • GC05M134572

Summaries for C5orf66-AS2 Gene

GeneCards Summary for C5orf66-AS2 Gene

C5orf66-AS2 (C5orf66 Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for C5orf66-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C5orf66-AS2 Gene

Genomics for C5orf66-AS2 Gene

GeneHancer (GH) Regulatory Elements for C5orf66-AS2 Gene

Promoters and enhancers for C5orf66-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J135249 Enhancer 0.9 ENCODE dbSUPER 650.7 -1.7 -1667 0.2 HDAC1 TEAD4 JUN FOSL1 CTBP1 ZNF766 ZBTB48 FOS ATF7 GATAD2A C5orf66-AS2 GC05M135248 GC05M135339 C5orf66
GH05J135218 Enhancer 0.6 ENCODE dbSUPER 11.9 +28.9 28899 1.4 NFIC NFIB C5orf66-AS2 LOC105379188 C5orf66
GH05J135222 Enhancer 0.6 ENCODE dbSUPER 11.9 +25.8 25753 0.2 FOSL1 POLR2A C5orf66-AS2 LOC105379188 C5orf66
GH05J135241 Enhancer 1.3 Ensembl ENCODE dbSUPER 5.2 +3.3 3288 6.3 HDGF FOXA2 ZNF133 SIN3A FEZF1 ZNF2 TCF12 GLIS2 ATF7 FOS ENSG00000254239 C5orf66-AS2 LOC105379188 C5orf66
GH05J135214 Enhancer 0.6 dbSUPER 11.2 +33.0 33008 0.6 BCOR ZNF146 CEBPB MAX ZMYM3 CEBPG IKZF1 ZFP36 KDM1A C5orf66-AS2 LOC105379188 C5orf66
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C5orf66-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C5orf66-AS2 Gene

Genomic Locations for C5orf66-AS2 Gene
chr5:135,236,234-135,248,179
(GRCh38/hg38)
Size:
11,946 bases
Orientation:
Minus strand
chr5:134,571,924-134,583,869
(GRCh37/hg19)

Genomic View for C5orf66-AS2 Gene

Genes around C5orf66-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C5orf66-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C5orf66-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C5orf66-AS2 Gene

Proteins for C5orf66-AS2 Gene

Post-translational modifications for C5orf66-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C5orf66-AS2 Gene

Domains & Families for C5orf66-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C5orf66-AS2 Gene

Function for C5orf66-AS2 Gene

Phenotypes From GWAS Catalog for C5orf66-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C5orf66-AS2 Gene

Localization for C5orf66-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C5orf66-AS2 Gene

Pathways & Interactions for C5orf66-AS2 Gene

SuperPathways for C5orf66-AS2 Gene

No Data Available

Interacting Proteins for C5orf66-AS2 Gene

Gene Ontology (GO) - Biological Process for C5orf66-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C5orf66-AS2 Gene

Drugs & Compounds for C5orf66-AS2 Gene

No Compound Related Data Available

Transcripts for C5orf66-AS2 Gene

mRNA/cDNA for C5orf66-AS2 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(3) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C5orf66-AS2 Gene

No ASD Table

Relevant External Links for C5orf66-AS2 Gene

GeneLoc Exon Structure for
C5orf66-AS2
ECgene alternative splicing isoforms for
C5orf66-AS2

Expression for C5orf66-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C5orf66-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for C5orf66-AS2 Gene

This gene is overexpressed in Testis (x25.5), Pituitary (x9.6), and Esophagus - Mucosa (x5.0).
genes like me logo Genes that share expression patterns with C5orf66-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C5orf66-AS2 Gene

Orthologs for C5orf66-AS2 Gene

Evolution for C5orf66-AS2 Gene

ENSEMBL:
Gene Tree for C5orf66-AS2 (if available)
TreeFam:
Gene Tree for C5orf66-AS2 (if available)

No data available for Orthologs for C5orf66-AS2 Gene

Paralogs for C5orf66-AS2 Gene

No data available for Paralogs for C5orf66-AS2 Gene

Variants for C5orf66-AS2 Gene

Sequence variations from dbSNP and Humsavar for C5orf66-AS2 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000057883 -- 135,236,179(-) A/C downstream_transcript_variant
rs1000238555 -- 135,241,525(-) G/A intron_variant
rs1000376726 -- 135,247,303(-) G/A intron_variant
rs1000558053 -- 135,246,335(-) G/C intron_variant
rs1000610938 -- 135,239,529(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C5orf66-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv830496 CNV gain 17160897

Additional Variant Information for C5orf66-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C5orf66-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C5orf66-AS2 Gene

Disorders for C5orf66-AS2 Gene

Additional Disease Information for C5orf66-AS2

No disorders were found for C5orf66-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C5orf66-AS2 Gene

Publications for C5orf66-AS2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58
  3. Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis. (PMID: 19240791) Graubert TA … Walter MJ (PloS one 2009) 3 58

Products for C5orf66-AS2 Gene

Sources for C5orf66-AS2 Gene

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