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Aliases for C5orf66-AS1 Gene

Subcategory (RNA class) for C5orf66-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C5orf66-AS1 Gene

  • C5orf66 Antisense RNA 1 2 3 5
  • Esophagus Epithelial Intergenic Specific Transcript 2 3
  • CTC-276P9.1 3
  • Epist 3

External Ids for C5orf66-AS1 Gene

Previous GeneCards Identifiers for C5orf66-AS1 Gene

  • GC05M134375

Summaries for C5orf66-AS1 Gene

GeneCards Summary for C5orf66-AS1 Gene

C5orf66-AS1 (C5orf66 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for C5orf66-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C5orf66-AS1 Gene

Genomics for C5orf66-AS1 Gene

GeneHancer (GH) Regulatory Elements for C5orf66-AS1 Gene

Promoters and enhancers for C5orf66-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I135035 Enhancer 0.6 dbSUPER 565.4 +1.5 1471 5.3 ZNF189 SUZ12 BACH1 REST ZIC2 POLR2A ZKSCAN8 ZBTB33 EZH2 C5orf66-AS1 PITX1 ENSG00000270021 C5orf66
GH05I135026 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 15.1 +9.0 9040 9.3 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 ZNF2 POLR2B ZNF213 E2F8 PITX1 C5orf66-AS1 C5orf66 ENSG00000277619 CATSPER3
GH05I134903 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 7.1 +134.6 134620 3.6 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF207 ZNF143 PCBD2 ENSG00000279799 DDX46 SEC24A TXNDC15 C5orf66 JADE2 C5orf66-AS1 MTCYBP18
GH05I135024 Enhancer 1 ENCODE dbSUPER 14.4 +14.6 14618 1.5 MEIS2 TFAP4 PKNOX1 ATF1 JUN ZIC2 RAD21 THRB FOSL1 GATA3 C5orf66-AS1 PITX1 C5orf66 CATSPER3
GH05I134630 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 5.3 +407.8 407847 2.5 ZFP64 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC MEF2D SAR1B DDX46 JADE2 C5orf24 C5orf66 TXNDC15 SEC24A SKP1 C5orf66-AS1 CAMLG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C5orf66-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C5orf66-AS1 Gene

Genomic Locations for C5orf66-AS1 Gene
chr5:135,038,831-135,040,047
(GRCh38/hg38)
Size:
1,217 bases
Orientation:
Minus strand
chr5:134,374,528-134,375,737
(GRCh37/hg19)

Genomic View for C5orf66-AS1 Gene

Genes around C5orf66-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C5orf66-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C5orf66-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C5orf66-AS1 Gene

Proteins for C5orf66-AS1 Gene

Post-translational modifications for C5orf66-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C5orf66-AS1 Gene

Domains & Families for C5orf66-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C5orf66-AS1 Gene

Function for C5orf66-AS1 Gene

Phenotypes From GWAS Catalog for C5orf66-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C5orf66-AS1 Gene

Localization for C5orf66-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C5orf66-AS1 Gene

Pathways & Interactions for C5orf66-AS1 Gene

SuperPathways for C5orf66-AS1 Gene

No Data Available

Interacting Proteins for C5orf66-AS1 Gene

Gene Ontology (GO) - Biological Process for C5orf66-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C5orf66-AS1 Gene

Drugs & Compounds for C5orf66-AS1 Gene

No Compound Related Data Available

Transcripts for C5orf66-AS1 Gene

mRNA/cDNA for C5orf66-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C5orf66-AS1 Gene

No ASD Table

Relevant External Links for C5orf66-AS1 Gene

GeneLoc Exon Structure for
C5orf66-AS1
ECgene alternative splicing isoforms for
C5orf66-AS1

Expression for C5orf66-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C5orf66-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C5orf66-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x19.2), Pituitary (x8.3), Minor Salivary Gland (x6.3), and Vagina (x6.3).
genes like me logo Genes that share expression patterns with C5orf66-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C5orf66-AS1 Gene

Orthologs for C5orf66-AS1 Gene

Evolution for C5orf66-AS1 Gene

ENSEMBL:
Gene Tree for C5orf66-AS1 (if available)
TreeFam:
Gene Tree for C5orf66-AS1 (if available)

No data available for Orthologs for C5orf66-AS1 Gene

Paralogs for C5orf66-AS1 Gene

No data available for Paralogs for C5orf66-AS1 Gene

Variants for C5orf66-AS1 Gene

Sequence variations from dbSNP and Humsavar for C5orf66-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000294473 -- 135,041,083(-) G/A upstream_transcript_variant
rs1002806255 -- 135,039,897(-) G/A non_coding_transcript_variant
rs1002971504 -- 135,040,537(-) C/T upstream_transcript_variant
rs1003067619 -- 135,039,693(-) A/G non_coding_transcript_variant
rs1003107065 -- 135,040,845(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for C5orf66-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv969n67 CNV gain 20364138
nsv462458 CNV loss 19166990
nsv599744 CNV loss 21841781
nsv823239 CNV gain 20364138
nsv823240 CNV gain 20364138
nsv830495 CNV loss 17160897

Additional Variant Information for C5orf66-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C5orf66-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C5orf66-AS1 Gene

Disorders for C5orf66-AS1 Gene

Additional Disease Information for C5orf66-AS1

No disorders were found for C5orf66-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C5orf66-AS1 Gene

Publications for C5orf66-AS1 Gene

  1. Transcriptome profiling of esophageal squamous cell carcinoma reveals a long noncoding RNA acting as a tumor suppressor. (PMID: 26158411) Wei G … Chen R (Oncotarget 2015) 2 3 58
  2. Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes. (PMID: 16368877) Choy KW … Pang CP (Physiological genomics 2006) 3 58
  3. Aberrant methylation-mediated silencing of lncRNA CTC-276P9.1 is associated with malignant progression of esophageal squamous cell carcinoma. (PMID: 29524086) Guo W … Shan B (Clinical & experimental metastasis 2018) 3

Products for C5orf66-AS1 Gene

Sources for C5orf66-AS1 Gene

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