Free for academic non-profit institutions. Other users need a Commercial license

Aliases for C5orf17 Gene

Subcategory (RNA class) for C5orf17 Gene


Quality Score for this RNA gene is


Aliases for C5orf17 Gene

  • Chromosome 5 Open Reading Frame 17 (Putative) 2 3 5
  • Chromosome 5 Open Reading Frame 17 2

External Ids for C5orf17 Gene

Previous GeneCards Identifiers for C5orf17 Gene

  • GC00U916960
  • GC05U900659
  • GC05P023988

Summaries for C5orf17 Gene

GeneCards Summary for C5orf17 Gene

C5orf17 (Chromosome 5 Open Reading Frame 17 (Putative)) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for C5orf17 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C5orf17 Gene

Genomics for C5orf17 Gene

GeneHancer (GH) Regulatory Elements for C5orf17 Gene

Promoters and enhancers for C5orf17 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I023012 Promoter 0.9 Ensembl 5.5 -938.0 -938047 1 CEBPB ELF1 ZNF592 MAFF NBN ZNF24 ATF7 PRDM1 IKZF2 TCF7L2 ENSG00000249404 C5orf17 LOC105374686 GC05M022692
GH05I024263 Enhancer 0.5 dbSUPER 8.1 +313.5 313465 2.3 SREBF1 STAT1 POLR2A CEBPB MNT C5orf17 LOC105374689 LOC503540
GH05I024283 Enhancer 0.6 FANTOM5 dbSUPER 6.3 +332.0 332005 0.4 POLR2A TCF7L2 C5orf17 LOC105374689 LOC503540
GH05I024285 Enhancer 0.5 dbSUPER 6.8 +339.7 339664 10.1 NFYB CREB1 CEBPB ATF7 ATF2 LOC105374689 C5orf17 LOC503540
GH05I024266 Enhancer 0.3 dbSUPER 8.6 +316.5 316502 3 RAD21 C5orf17 LOC105374689 LOC503540
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C5orf17 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C5orf17 Gene

Genomic Locations for C5orf17 Gene
249,966 bases
Plus strand

Genomic View for C5orf17 Gene

Genes around C5orf17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C5orf17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C5orf17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C5orf17 Gene

Proteins for C5orf17 Gene

  • Protein details for C5orf17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C5orf17
    Protein Accession:
    Secondary Accessions:
    • Q2I376

    Protein attributes for C5orf17 Gene

    161 amino acids
    Molecular mass:
    17397 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C5orf17 Gene


neXtProt entry for C5orf17 Gene

Post-translational modifications for C5orf17 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C5orf17 Gene

Domains & Families for C5orf17 Gene

Protein Domains for C5orf17 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C5orf17: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C5orf17 Gene

Function for C5orf17 Gene

Phenotypes From GWAS Catalog for C5orf17 Gene

Phenotypes for C5orf17 Gene

genes like me logo Genes that share phenotypes with C5orf17: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C5orf17 Gene

Localization for C5orf17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C5orf17 Gene

Pathways & Interactions for C5orf17 Gene

SuperPathways for C5orf17 Gene

No Data Available

Interacting Proteins for C5orf17 Gene

Gene Ontology (GO) - Biological Process for C5orf17 Gene


No data available for Pathways by source and SIGNOR curated interactions for C5orf17 Gene

Drugs & Compounds for C5orf17 Gene

No Compound Related Data Available

Transcripts for C5orf17 Gene

mRNA/cDNA for C5orf17 Gene

(4) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C5orf17 Gene

Chromosome 5 open reading frame 17:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C5orf17 Gene

No ASD Table

Relevant External Links for C5orf17 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C5orf17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C5orf17 Gene

mRNA differential expression in normal tissues according to GTEx for C5orf17 Gene

This gene is overexpressed in Minor Salivary Gland (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of C5orf17 Gene:


SOURCE GeneReport for Unigene cluster for C5orf17 Gene:

genes like me logo Genes that share expression patterns with C5orf17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C5orf17 Gene

Orthologs for C5orf17 Gene

Evolution for C5orf17 Gene

Gene Tree for C5orf17 (if available)
Gene Tree for C5orf17 (if available)

No data available for Orthologs for C5orf17 Gene

Paralogs for C5orf17 Gene

(1) SIMAP similar genes for C5orf17 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with C5orf17: view

No data available for Paralogs for C5orf17 Gene

Variants for C5orf17 Gene

Sequence variations from dbSNP and Humsavar for C5orf17 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000015373 -- 23,988,850(+) A/G intron_variant
rs1000016808 -- 24,101,323(+) A/G intron_variant
rs1000056414 -- 24,043,120(+) G/C intron_variant
rs1000060087 -- 24,148,332(+) C/T intron_variant
rs1000062147 -- 23,950,948(+) A/G upstream_transcript_variant

Variation tolerance for C5orf17 Gene

Gene Damage Index Score: 4.87; 67.39% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C5orf17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for C5orf17 Gene

Disorders for C5orf17 Gene

Additional Disease Information for C5orf17

No disorders were found for C5orf17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C5orf17 Gene

Publications for C5orf17 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. A protein array screen for Kaposi's sarcoma-associated herpesvirus LANA interactors links LANA to TIP60, PP2A activity, and telomere shortening. (PMID: 22379092) Shamay M … Hayward SD (Journal of virology 2012) 3 58

Products for C5orf17 Gene

Sources for C5orf17 Gene

Loading form....