Aliases for C5orf67 Gene

Subcategory (RNA class) for C5orf67 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for C5orf67 Gene

  • Chromosome 5 Putative Open Reading Frame 67 2 3 5
  • Uncharacterized Protein C5orf67 3 4
  • C5orf67 2 5
  • Chromosome 5 Open Reading Frame 67 2
  • NONHSAG040426.2 91
  • NONHSAG040427.2 91
  • Lnc-C5orf67-2 165
  • HSALNG0041953 164
  • HSALNG0041954 164
  • Lnc-ANKRD55-7 165

External Ids for C5orf67 Gene

Summaries for C5orf67 Gene

GeneCards Summary for C5orf67 Gene

C5orf67 (Chromosome 5 Putative Open Reading Frame 67) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for C5orf67 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C5orf67 Gene

Genomics for C5orf67 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for C5orf67 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C5orf67 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for C5orf67

Genomic Locations for C5orf67 Gene

Genomic Locations for C5orf67 Gene
chr5:56,511,282-56,606,256
(GRCh38/hg38)
Size:
94,975 bases
Orientation:
Minus strand
chr5:55,807,394-55,902,059
(GRCh37/hg19)
Size:
94,666 bases
Orientation:
Minus strand

Genomic View for C5orf67 Gene

Genes around C5orf67 on UCSC Golden Path with GeneCards custom track
C5orf67 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
C5orf67 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C5orf67 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C5orf67 Gene

Proteins for C5orf67 Gene

  • Protein details for C5orf67 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    F2Z3F1-CE067_HUMAN
    Recommended name:
    Uncharacterized protein C5orf67
    Protein Accession:
    F2Z3F1

    Protein attributes for C5orf67 Gene

    Size:
    127 amino acids
    Molecular mass:
    14123 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C5orf67 Gene

Post-translational modifications for C5orf67 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C5orf67 Gene

Domains & Families for C5orf67 Gene

Gene Families for C5orf67 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C5orf67 Gene

ProtoNet:
genes like me logo Genes that share domains with C5orf67: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C5orf67 Gene

Function for C5orf67 Gene

Phenotypes From GWAS Catalog for C5orf67 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C5orf67 Gene

Localization for C5orf67 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C5orf67 gene
Compartment Confidence
nucleus 2
mitochondrion 1
cytosol 1
peroxisome 0

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C5orf67 Gene

Pathways & Interactions for C5orf67 Gene

PathCards logo

SuperPathways for C5orf67 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C5orf67 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C5orf67 Gene

Drugs & Compounds for C5orf67 Gene

No Compound Related Data Available

Transcripts for C5orf67 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for C5orf67 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000E60A56_9606 lncRNA 1074 2

HGNC: 51252,

RefSeq: NR_161255,

URS0000DB7B04_9606 lncRNA 765 1

Ensembl: ENST00000648716 (view in UCSC) ,

URS0001A17744_9606 lncRNA 354 1

Ensembl: ENST00000611197 (view in UCSC) ,

URS00008BCB80_9606 lncRNA 730 3

LncBook: HSALNT0088095,

LNCipedia: lnc-C5orf67-2:2,

NONCODE: NONHSAT101543.2,

URS00008BDFDC_9606 lncRNA 261 3

LncBook: HSALNT0088103,

LNCipedia: lnc-ANKRD55-7:1,

NONCODE: NONHSAT101547.2,

C5orf67 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for C5orf67 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C5orf67

Alternative Splicing Database (ASD) splice patterns (SP) for C5orf67 Gene

No ASD Table

Relevant External Links for C5orf67 Gene

GeneLoc Exon Structure for
C5orf67

Expression for C5orf67 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C5orf67 Gene

genes like me logo Genes that share expression patterns with C5orf67: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C5orf67 Gene

Orthologs for C5orf67 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C5orf67 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 100 (a)
OneToMany
-- 31
  • 100 (a)
OneToMany
Species where no ortholog for C5orf67 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for C5orf67 Gene

ENSEMBL:
Gene Tree for C5orf67 (if available)
TreeFam:
Gene Tree for C5orf67 (if available)

Paralogs for C5orf67 Gene

No data available for Paralogs for C5orf67 Gene

Variants for C5orf67 Gene

Additional dbSNP identifiers (rs#s) for C5orf67 Gene

Structural Variations from Database of Genomic Variants (DGV) for C5orf67 Gene

Variant ID Type Subtype PubMed ID
esv2509875 CNV deletion 19546169
esv2672832 CNV deletion 23128226
esv2730197 CNV deletion 23290073
esv275187 CNV gain+loss 21479260
esv3565942 CNV deletion 23714750
esv3605121 CNV loss 21293372
nsv1021885 CNV gain 25217958
nsv1026100 CNV gain 25217958
nsv4836 CNV insertion 18451855
nsv830308 CNV gain 17160897

Additional Variant Information for C5orf67 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C5orf67

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for C5orf67 Gene

Disorders for C5orf67 Gene

No disorders were found for C5orf67 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C5orf67 Gene

Publications for C5orf67 Gene

  1. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J … Rubin EM (Nature 2004) 3 4
  2. Genome-wide association analyses identify 18 new loci associated with serum urate concentrations. (PMID: 23263486) Köttgen A … Gieger C (Nature genetics 2013) 3
  3. Discovery and refinement of loci associated with lipid levels. (PMID: 24097068) Willer CJ … Global Lipids Genetics Consortium (Nature genetics 2013) 3
  4. Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits. (PMID: 23754948) Randall JC … Heid IM (PLoS genetics 2013) 3
  5. Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits. (PMID: 24204828) Zheng JS … Lai CQ (PloS one 2013) 3

Products for C5orf67 Gene

Sources for C5orf67 Gene