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Aliases for C5orf47 Gene
Aliases for C5orf47 Gene
External Ids for C5orf47 Gene
- HGNC: 27026
- Entrez Gene: 133491
- Ensembl: ENSG00000185056
- UniProtKB: Q569G3
Previous GeneCards Identifiers for C5orf47 Gene
- GC05P173334
- GC05P168512
- GC05P173400
Summaries for C5orf47 Gene
GeneCards Summary for C5orf47 Gene
C5orf47 (Chromosome 5 Open Reading Frame 47) is a Protein Coding gene.
Additional gene information for C5orf47 Gene
- HGNC(27026)
- Entrez Gene(133491)
- Ensembl(ENSG00000185056)
- UniProtKB(Q569G3)
- Open Targets Platform(ENSG00000185056)
- Search for C5orf47 at DataMed
- Search for C5orf47 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C5orf47 Gene
Genomics for C5orf47 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for C5orf47 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around C5orf47 on the GeneHancer Hub at the UCSC Golden Path
Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for C5orf47
- Top Transcription factor binding sites by QIAGEN in the C5orf47 gene promoter:
-
- Cart-1
- E47
- HNF-3beta
- MyoD
- Pax-4a
- Pbx1a
- POU3F2
- POU3F2 (N-Oct-5a)
- POU3F2 (N-Oct-5b)
- Tal-1
Genomic Locations for C5orf47 Gene
Genomic Locations for C5orf47 Gene
- chr5:173,973,779-174,007,524
- (GRCh38/hg38)
- Size:
- 33,746 bases
- Orientation:
- Plus strand
- chr5:173,400,782-173,433,143
- (GRCh37/hg19)
- Size:
- 32,362 bases
- Orientation:
- Plus strand
Genomic View for C5orf47 Gene
Genes around C5orf47 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 5q35.2 by HGNC
- 5q35.2 by Entrez Gene
- 5q35.2 by Ensembl
C5orf47 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for C5orf47 Gene
Proteins for C5orf47 Gene
-
Protein details for C5orf47 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q569G3-CE047_HUMAN
- Recommended name:
- Uncharacterized protein C5orf47
- Protein Accession:
- Q569G3
- Q8IYU7
Protein attributes for C5orf47 Gene
- Size:
- 176 amino acids
- Molecular mass:
- 19206 Da
- Quaternary structure:
- No Data Available
- SequenceCaution:
-
- Sequence=AAH34971.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=AAH92489.1; Type=Erroneous initiation; Evidence={ECO:0000305};
Protein Expression for C5orf47 Gene
Post-translational modifications for C5orf47 Gene
Other Protein References for C5orf47 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
Protein Products
-
OriGene Purified Proteins for C5orf47
- Search Origene for MassSpec and Protein Over-expression Lysates for C5orf47
- Origene Custom Protein Services for C5orf47
No data available for DME Specific Peptides for C5orf47 Gene
Domains & Families for C5orf47 Gene
Gene Families for C5orf47 Gene
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C5orf47 Gene
Function for C5orf47 Gene
Phenotypes From GWAS Catalog for C5orf47 Gene
Phenotypes for C5orf47 Gene
- GenomeRNAi human phenotypes for C5orf47:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for C5orf47 - Select products 50% OFF >
- * C5orf47 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
-
OriGene CRISPR knockouts for C5orf47
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for C5orf47
-
Santa Cruz Biotechnology (SCBT) CRISPR for C5orf47
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for C5orf47
- Browse OriGene Inhibitory RNA Products For C5orf47
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C5orf47
Clone Products
- Applied Biological Materials (abm): Clones for C5orf47 - Select products 50% OFF >
- * C5orf47 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Sino Biological Human cDNA Clone for C5orf47
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for C5orf47
Cell Line Products
-
Horizon Cell Lines for C5orf47
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C5orf47 Gene
Localization for C5orf47 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 2 |
| cytosol | 1 |
| mitochondrion | 0 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C5orf47 Gene
Transcripts for C5orf47 Gene
mRNA/cDNA for C5orf47 Gene
- 1 REFSEQ mRNAs :
- 9 NCBI additional mRNA sequence :
- 2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000522195 1198 nts (view in UCSC)
- ENST00000340147 2511 nts (view in UCSC)
CRISPR Products
- Applied Biological Materials (abm): CRISPR Clones for C5orf47 - Select products 50% OFF >
- * C5orf47 CRISPR as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
-
OriGene CRISPR knockouts for C5orf47
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for C5orf47
-
Santa Cruz Biotechnology (SCBT) CRISPR for C5orf47
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for C5orf47
- Browse OriGene Inhibitory RNA Products For C5orf47
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C5orf47
Clone Products
- Applied Biological Materials (abm): Clones for C5orf47 - Select products 50% OFF >
- * C5orf47 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
- * Gene synthesis, site-directed mutagenesis, subcloning, and more services - Browse All
- Sino Biological Human cDNA Clone for C5orf47
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for C5orf47
Relevant External Links for C5orf47 Gene
- GeneLoc Exon Structure for
- C5orf47
Expression for C5orf47 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Testis (Reproductive System)
mRNA differential expression in normal tissues according to GTEx for C5orf47 Gene
This gene is overexpressed in Testis (x44.2).
This gene is overexpressed in Testis (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C5orf47 Gene
- Elite partner
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C5orf47
SOURCE GeneReport for Unigene cluster for C5orf47 Gene:
Hs.131469Primer Products
-
OriGene qPCR primer pairs for C5orf47
Gene Expression Assay Products
No data available for mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C5orf47 Gene
Orthologs for C5orf47 Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | C5H5orf47 30 |
|
||
| C5orf47 31 |
|
OneToOne | |||
| Dog (Canis familiaris) |
Mammalia | C5orf47 31 |
|
OneToOne | |
| Mouse (Mus musculus) |
Mammalia | 4930524B15Rik 30 17 31 |
|
OneToOne | |
| Rat (Rattus norvegicus) |
Mammalia | RGD1311343 30 |
|
- Species where no ortholog for C5orf47 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- Cow (Bos Taurus)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Lizard (Anolis carolinensis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Oppossum (Monodelphis domestica)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Platypus (Ornithorhynchus anatinus)
- Rainbow Trout (Oncorhynchus mykiss)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
- Zebrafish (Danio rerio)
Paralogs for C5orf47 Gene
No data available for Paralogs for C5orf47 Gene
Variants for C5orf47 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1667e212 | CNV | loss | 25503493 |
| esv2497414 | CNV | deletion | 19546169 |
| nsv600298 | CNV | gain | 21841781 |
| nsv600323 | CNV | gain | 21841781 |
Gene Damage Index Score:
3.36;
53.83% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for C5orf47 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- C5orf47
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for C5orf47 Gene
Disorders for C5orf47 Gene
Additional Disease Information for C5orf47
No disorders were found for C5orf47 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C5orf47 Gene
Publications for C5orf47 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4
- The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J … Rubin EM (Nature 2004) 4
ExternalLinks
Products for C5orf47 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- OriGene Purified Proteins for C5orf47
- Search Origene for MassSpec and Protein Over-expression Lysates for C5orf47
- Origene Custom Protein Services for C5orf47
- Origene shrna, sirna, and RNAi products in human, mouse, rat for C5orf47
- Browse OriGene Inhibitory RNA Products For C5orf47
- OriGene qPCR primer pairs for C5orf47
- OriGene CRISPR knockouts for C5orf47
- OriGene ORF clones in human for C5orf47
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For C5orf47
- Sino Biological Human cDNA Clone for C5orf47
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse cDNA Clones
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- VectorBuilder Custom and pre-made DNA vectors for C5orf47 (ie. gene expression, shRNA knockdown, CRISPR)
- VectorBuilder Viral vectors for C5orf47 (ie. lentivirus, AAV, adenovirus)
- VectorBuilder CRISPR vectors for C5orf47 (ie. knockout, knockin, CRISPRa, CRISPRi)
- VectorBuilder Virus packaging for C5orf47 CRISPR vectors (ie. lentivirus, AAV, adenovirus)
- VectorBuilder Stable cell line generation for C5orf47
- Horizon Cell Lines for C5orf47
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for C5orf47
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for C5orf47
- Search GeneCopoeia for miRNA 3'UTR Target clone products for C5orf47
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C5orf47
Sources for C5orf47 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB