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C4BPB Gene(Protein Coding)

Complement Component 4 Binding Protein Beta

GCID:
GC01P207088
GIFtS:
45
Genes Participants
UDN Logo

Aliases for C4BPB Gene

Aliases for C4BPB Gene

  • Complement Component 4 Binding Protein Beta 2 3 5
  • Complement Component 4 Binding Protein, Beta Chain 2
  • Complement Component 4-Binding Protein, Beta 2
  • C4b Binding Protein, Beta Chain 2
  • C4b-Binding Protein Beta Chain 3
  • C4BP 3

External Ids for C4BPB Gene

Previous HGNC Symbols for C4BPB Gene

  • C4BP

Previous GeneCards Identifiers for C4BPB Gene

  • GC01P205922
  • GC01P202972
  • GC01P203905
  • GC01P204346
  • GC01P203650
  • GC01P205328
  • GC01P207262
  • GC01P177959
  • GC01P207006

Summaries for C4BPB Gene

Entrez Gene Summary for C4BPB Gene

  • This gene encodes a member of a superfamily of proteins composed predominantly of tandemly arrayed short consensus repeats of approximately 60 amino acids. A single, unique beta-chain encoded by this gene assembles with seven identical alpha-chains into the predominant isoform of C4b-binding protein, a multimeric protein that controls activation of the complement cascade through the classical pathway. C4b-binding protein has a regulatory role in the coagulation system also, mediated through the beta-chain binding of protein S, a vitamin K-dependent protein that serves as a cofactor of activated protein C. The genes encoding both alpha and beta chains are located adjacent to each other on human chromosome 1 in the regulator of complement activation gene cluster. Alternative splicing gives rise to multiple transcript variants. [provided by RefSeq, Jul 2008]

GeneCards Summary for C4BPB Gene

C4BPB (Complement Component 4 Binding Protein Beta) is a Protein Coding gene. Among its related pathways are Complement and coagulation cascades and FOXA1 transcription factor network. An important paralog of this gene is CFB.

UniProtKB/Swiss-Prot for C4BPB Gene

  • Controls the classical pathway of complement activation. It binds as a cofactor to C3b/C4b inactivator (C3bINA), which then hydrolyzes the complement fragment C4b. It also accelerates the degradation of the C4bC2a complex (C3 convertase) by dissociating the complement fragment C2a. It also interacts with anticoagulant protein S and with serum amyloid P component. The beta chain binds protein S.

Additional gene information for C4BPB Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C4BPB Gene

Genomics for C4BPB Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for C4BPB Gene

Promoters and enhancers for C4BPB Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J207088 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 659.7 +0.6 640 2.9 FOXA2 ZFP64 ARID4B DMAP1 ZNF48 ETS1 YY1 GTF3C2 SLC30A9 RUNX3 C4BPB EIF2D RPL7AP20 CDCA4P4 C4BPA
GH01J207017 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 15.2 -62.2 -62174 18.4 HDGF HNRNPUL1 PKNOX1 CLOCK SMAD1 FOXA2 ARNT ARID4B NEUROD1 SIN3A C1orf116 EIF2D C4BPA CDCA4P4 C4BPB FCAMR PIGR FCMR RPL7AP20 IL20
GH01J207407 Enhancer 1 FANTOM5 Ensembl 11.4 +319.1 319113 0.7 HDAC1 PKNOX1 BATF IRF4 RAD21 YY1 TCF12 EGR1 RCOR1 ETV6 CR1 CD55 CR2 C4BPB C4BPA CD46 YOD1 ENSG00000283044 LOC105372881
GH01J207405 Enhancer 0.8 ENCODE 11.4 +316.3 316269 0.2 FOXA2 RB1 ARNT ZSCAN9 RAD21 RFX5 CHAMP1 ARID2 ZNF143 MIXL1 CR2 CR1 C4BPB CD55 C4BPA ENSG00000283044 LOC105372881
GH01J206768 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4.4 -317.9 -317918 4.6 HDGF HDAC1 PKNOX1 SMAD1 STAT5A ZBTB40 BATF KLF5 IRF4 ZNF143 IL10 ENSG00000284486 IL19 MAPKAPK2 IL24 IL20 C4BPB RASSF5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C4BPB on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the C4BPB gene promoter:
  • GATA-1
  • C/EBPbeta
  • GATA-3
  • GATA-2

Genomic Locations for C4BPB Gene

Genomic Locations for C4BPB Gene
chr1:207,088,842-207,099,993
(GRCh38/hg38)
Size:
11,152 bases
Orientation:
Plus strand
chr1:207,262,187-207,273,338
(GRCh37/hg19)
Size:
11,152 bases
Orientation:
Plus strand

Genomic View for C4BPB Gene

Genes around C4BPB on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C4BPB Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C4BPB Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for C4BPB Gene

Proteins for C4BPB Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for C4BPB Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P20851-C4BPB_HUMAN
    Recommended name:
    C4b-binding protein beta chain
    Protein Accession:
    P20851
    Secondary Accessions:
    • A5JYP8
    • D3DT81
    • Q5VVR0
    • Q9BS25

    Protein attributes for C4BPB Gene

    Size:
    252 amino acids
    Molecular mass:
    28357 Da
    Quaternary structure:
    • Disulfide-linked complex of alpha and beta chains of 3 possible sorts: a 570 kDa complex of 7 alpha chains and 1 beta chain, a 530 kDa homoheptamer of alpha chains or a 500 kDa complex of 6 alpha chains and 1 beta chain. The central body of the alpha chain homopolymer supports tentacles, each with the binding site for C4b at the end.

    Alternative splice isoforms for C4BPB Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C4BPB Gene

Protein Expression for C4BPB Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for C4BPB Gene

  • Glycosylation at posLast=154154, Asn117, posLast=9898, Asn71, and posLast=6464
  • Modification sites at PhosphoSitePlus

Other Protein References for C4BPB Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C4BPB Gene

Domains & Families for C4BPB Gene

Gene Families for C4BPB Gene

HGNC:
Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted secreted proteins

Protein Domains for C4BPB Gene

Blocks:
InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C4BPB Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C4BPB: view

No data available for UniProtKB/Swiss-Prot for C4BPB Gene

Function for C4BPB Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for C4BPB Gene

UniProtKB/Swiss-Prot Function:
Controls the classical pathway of complement activation. It binds as a cofactor to C3b/C4b inactivator (C3bINA), which then hydrolyzes the complement fragment C4b. It also accelerates the degradation of the C4bC2a complex (C3 convertase) by dissociating the complement fragment C2a. It also interacts with anticoagulant protein S and with serum amyloid P component. The beta chain binds protein S.
GENATLAS Biochemistry:
complement component 4,binding protein beta,45kDa,regulator of C3 convertase of classical pathway,see RCA@

Phenotypes From GWAS Catalog for C4BPB Gene

Gene Ontology (GO) - Molecular Function for C4BPB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 14607961
genes like me logo Genes that share ontologies with C4BPB: view
genes like me logo Genes that share phenotypes with C4BPB: view

Animal Model Products

miRNA for C4BPB Gene

miRTarBase miRNAs that target C4BPB

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C4BPB Gene

Localization for C4BPB Gene

Subcellular locations from UniProtKB/Swiss-Prot for C4BPB Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C4BPB gene
Compartment Confidence
extracellular 5
plasma membrane 4
cytosol 1
lysosome 1

Gene Ontology (GO) - Cellular Components for C4BPB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region NAS 14718574
GO:0005615 extracellular space IDA 14607961
GO:0005886 plasma membrane TAS --
GO:0044216 other organism cell IDA 22333221
genes like me logo Genes that share ontologies with C4BPB: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for C4BPB Gene

Pathways & Interactions for C4BPB Gene

genes like me logo Genes that share pathways with C4BPB: view

Pathways by source for C4BPB Gene

1 BioSystems pathway for C4BPB Gene
2 KEGG pathways for C4BPB Gene

Gene Ontology (GO) - Biological Process for C4BPB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006958 complement activation, classical pathway IEA --
GO:0007596 blood coagulation TAS 8325877
GO:0030449 regulation of complement activation TAS --
GO:0045087 innate immune response IEA --
GO:0045732 positive regulation of protein catabolic process IDA 22333221
genes like me logo Genes that share ontologies with C4BPB: view

No data available for SIGNOR curated interactions for C4BPB Gene

Drugs & Compounds for C4BPB Gene

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  1. Drug

(6) Drugs for C4BPB Gene - From: DrugBank and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Zinc Approved, Investigational Pharma Target 2430

(1) Additional Compounds for C4BPB Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with C4BPB: view

Transcripts for C4BPB Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for C4BPB Gene

(8) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(72) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C4BPB Gene

Complement component 4 binding protein, beta:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C4BPB Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7a · 7b · 7c
SP1: - - - -
SP2: - - - -
SP3: - - - - -
SP4: - - - - - -
SP5: - - - - -
SP6: -
SP7:
SP8: -
SP9:

Relevant External Links for C4BPB Gene

GeneLoc Exon Structure for
C4BPB
ECgene alternative splicing isoforms for
C4BPB

Expression for C4BPB Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C4BPB Gene

mRNA expression in normal human tissues for C4BPB Gene
mRNA expression by GTEx for C4BPB GenemRNA expression by BioGPS for C4BPB Gene

mRNA differential expression in normal tissues according to GTEx for C4BPB Gene

This gene is overexpressed in Liver (x46.3).

Protein differential expression in normal tissues from HIPED for C4BPB Gene

This gene is overexpressed in Serum (35.0), Plasma (22.0), and Synovial fluid (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C4BPB Gene



NURSA nuclear receptor signaling pathways regulating expression of C4BPB Gene:

C4BPB

SOURCE GeneReport for Unigene cluster for C4BPB Gene:

Hs.99886

Evidence on tissue expression from TISSUES for C4BPB Gene

  • Liver(4.6)
  • Bone marrow(4.1)
  • Muscle(4.1)
genes like me logo Genes that share expression patterns with C4BPB: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for C4BPB Gene

Orthologs for C4BPB Gene

This gene was present in the common ancestor of mammals.

Orthologs for C4BPB Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia C4BPB 34 33
  • 99.2 (n)
 OneToOne
dog
(Canis familiaris)
 Mammalia C4BPB 34 33
  • 80.13 (n)
 OneToOne
rat
(Rattus norvegicus)
 Mammalia C4bpb 33
  • 76.71 (n)
cow
(Bos Taurus)
 Mammalia C4BPB 34
  • 64 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia C4BPB 34
  • 48 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia C4BPB 34
  • 35 (a)
 OneToOne
Species where no ortholog for C4BPB was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C4BPB Gene

ENSEMBL:
Gene Tree for C4BPB (if available)
TreeFam:
Gene Tree for C4BPB (if available)
Aminode:
Evolutionary constrained regions (ECRs) for C4BPB: view image

Paralogs for C4BPB Gene

Paralogs for C4BPB Gene

(34) SIMAP similar genes for C4BPB Gene using alignment to 3 proteins:

  • C4BPB_HUMAN
  • E7EQT9_HUMAN
  • Q5VVQ7_HUMAN
genes like me logo Genes that share paralogs with C4BPB: view

Variants for C4BPB Gene

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  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for C4BPB Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs3813948 benign, not specified 207,096,513(+) T/C 3_prime_UTR_variant, intron_variant
rs56054349 benign, not specified 207,096,510(+) C/T 3_prime_UTR_variant, intron_variant
rs6690037 benign, not specified 207,090,484(+) A/C/G intron_variant
rs8942 benign, not specified 207,096,574(+) C/G/T coding_sequence_variant, downstream_transcript_variant, genic_downstream_transcript_variant, missense_variant, synonymous_variant
rs1000026195 -- 207,090,575(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C4BPB Gene

Variant ID Type Subtype PubMed ID
nsv832426 CNV gain 17160897

Variation tolerance for C4BPB Gene

Residual Variation Intolerance Score: 51.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.57; 12.36% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C4BPB Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C4BPB

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C4BPB Gene

Disorders for C4BPB Gene

Additional Disease Information for C4BPB

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for C4BPB Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C4BPB Gene

Publications for C4BPB Gene

  1. The human C4b-binding protein beta-chain gene. (PMID: 8325877) Hillarp A … Dahlbäck B (The Journal of biological chemistry 1993) 2 3 4 22 58
  2. Cloning of cDNA coding for the beta chain of human complement component C4b-binding protein: sequence homology with the alpha chain. (PMID: 2300577) Hillarp A … Dahlbäck B (Proceedings of the National Academy of Sciences of the United States of America 1990) 2 3 4 58
  3. C4BPB/C4BPA is a new susceptibility locus for venous thrombosis with unknown protein S-independent mechanism: results from genome-wide association and gene expression analyses followed by case-control studies. (PMID: 20212171) Buil A … Morange PE (Blood 2010) 3 44 58
  4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58
  5. Risk of meningioma and common variation in genes related to innate immunity. (PMID: 20406964) Rajaraman P … Inskip PD (Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2010) 3 44 58

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Sources for C4BPB Gene

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