C3P1 Gene (Pseudogene)

Complement Component 3 Precursor Pseudogene

GC19P010037
GIFtS:
19
See more...

Aliases for C3P1 Gene

Aliases for C3P1 Gene

  • Complement Component 3 Precursor Pseudogene 2 3 5
  • CPLP 2 3
  • Putative Protein C3P1 4
  • C3P1 5

External Ids for C3P1 Gene

Previous GeneCards Identifiers for C3P1 Gene

  • GC19P010013
  • GC19P010148
  • GC19P009734

Summaries for C3P1 Gene

GeneCards Summary for C3P1 Gene

C3P1 (Complement Component 3 Precursor Pseudogene) is a Pseudogene. Gene Ontology (GO) annotations related to this gene include endopeptidase inhibitor activity.

Additional gene information for C3P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C3P1 Gene

Genomics for C3P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for C3P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH19J010036 Enhancer 0.9 Ensembl ENCODE 600.7 -0.8 -800 0.8 GATAD2A ATF7 REST SP1 CEBPA SOX13 CEBPB FOXA2 ATF3 YY1 C3P1 MIR5589 lnc-RDH8-1 piR-57133-301 RDH8 SHFL
GH19J010078 Enhancer 0.4 Ensembl 5.2 +40.7 40698 0.6 YY1 HNF4A SP1 C3P1 lnc-C19orf66-1 SHFL RDH8
GH19J010071 Enhancer 0.6 ENCODE 0.3 +33.5 33497 0.2 HNRNPL SP1 FOXA2 ATF3 YY1 GABPA ZBTB33 JUND NR2F2 RAD21 HSALNG0123887 PPAN PPAN-P2RY11 ANGPTL6 RDH8 COL5A3 EIF3G OLFM2 SHFL lnc-RDH8-3
GH19J010072 Enhancer 0.6 Ensembl 0.3 +33.8 33798 0.4 SP1 FOXA2 ATF3 YY1 GABPA ZBTB33 JUND NR2F2 RAD21 HNF4A HSALNG0123887 ANGPTL6 PPAN PPAN-P2RY11 RDH8 COL5A3 EIF3G OLFM2 lnc-C19orf66-1 SHFL
GH19J010068 Enhancer 0.3 Ensembl 0.3 +30.8 30798 0.4 ZMYM3 HSALNG0123887 SHFL lnc-RDH8-3 C3P1 RDH8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C3P1 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the C3P1 gene promoter:
  • AML1a
  • Cdc5
  • GCNF
  • GCNF-1
  • GCNF-2
  • NF-kappaB
  • NF-kappaB1
  • NF-kappaB2
  • Olf-1
  • Sox9

Genomic Locations for C3P1 Gene

Genomic Locations for C3P1 Gene
chr19:10,037,803-10,074,138
(GRCh38/hg38)
Size:
36,336 bases
Orientation:
Plus strand
chr19:10,148,479-10,184,814
(GRCh37/hg19)
Size:
36,336 bases
Orientation:
Plus strand

Genomic View for C3P1 Gene

Genes around C3P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C3P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C3P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for C3P1 Gene

Proteins for C3P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for C3P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZMU1-C3P1_HUMAN
    Recommended name:
    Putative protein C3P1
    Protein Accession:
    Q6ZMU1

    Protein attributes for C3P1 Gene

    Size:
    363 amino acids
    Molecular mass:
    40197 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C3P1 Gene

Protein Expression for C3P1 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for C3P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C3P1 Gene

Domains & Families for C3P1 Gene

Protein Domains for C3P1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C3P1 Gene

GenScript: Design optimal peptide antigens:
  • Putative protein C3P1 (C3P1_HUMAN)
genes like me logo Genes that share domains with C3P1: view

No data available for Gene Families , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C3P1 Gene

Function for C3P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for C3P1 Gene

Gene Ontology (GO) - Molecular Function for C3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004866 endopeptidase inhibitor activity IEA --
genes like me logo Genes that share ontologies with C3P1: view
genes like me logo Genes that share phenotypes with C3P1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C3P1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C3P1 Gene

Localization for C3P1 Gene

Gene Ontology (GO) - Cellular Components for C3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IEA --
genes like me logo Genes that share ontologies with C3P1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for C3P1 Gene

Pathways & Interactions for C3P1 Gene

PathCards logo

SuperPathways for C3P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C3P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010951 negative regulation of endopeptidase activity IEA --
genes like me logo Genes that share ontologies with C3P1: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C3P1 Gene

Drugs & Compounds for C3P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for C3P1 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for C3P1 Gene

1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C3P1

Alternative Splicing Database (ASD) splice patterns (SP) for C3P1 Gene

No ASD Table

Relevant External Links for C3P1 Gene

GeneLoc Exon Structure for
C3P1

Expression for C3P1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C3P1 Gene

mRNA expression in normal human tissues for C3P1 Gene
mRNA expression by GTEx for C3P1 Gene

mRNA differential expression in normal tissues according to GTEx for C3P1 Gene

This gene is overexpressed in Liver (x52.6).

Protein differential expression in normal tissues from HIPED for C3P1 Gene

This gene is overexpressed in Fetal heart (19.8), Blymphocyte (15.1), Adrenal (12.3), Fetal gut (11.2), and CD8 Tcells (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C3P1 Gene



Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C3P1

SOURCE GeneReport for Unigene cluster for C3P1 Gene:

Hs.655363
genes like me logo Genes that share expression patterns with C3P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C3P1 Gene

Orthologs for C3P1 Gene

Evolution for C3P1 Gene

ENSEMBL:
Gene Tree for C3P1 (if available)
TreeFam:
Gene Tree for C3P1 (if available)

No data available for Orthologs for C3P1 Gene

Paralogs for C3P1 Gene

(2) SIMAP similar genes for C3P1 Gene using alignment to 1 proteins:

  • C3P1_HUMAN
genes like me logo Genes that share paralogs with C3P1: view

No data available for Paralogs for C3P1 Gene

Variants for C3P1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for C3P1 Gene

SNP ID Clinical significance and condition Chr 19 pos Variation AA Info Type
rs10403787 - p.Asp230Asn
rs1993466 - p.Asp251Gly
rs4552116 - p.Leu262Arg
rs8113341 - p.Gln172Arg

Structural Variations from Database of Genomic Variants (DGV) for C3P1 Gene

Variant ID Type Subtype PubMed ID
esv2558738 CNV deletion 19546169
esv3643647 CNV loss 21293372
nsv1131399 CNV deletion 24896259
nsv2414 CNV insertion 18451855
nsv458355 CNV loss 19166990
nsv578606 CNV loss 21841781

Additional Variant Information for C3P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C3P1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Additional dbSNP identifiers (rs#s) and Variation tolerance for C3P1 Gene

Disorders for C3P1 Gene

Additional Disease Information for C3P1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for C3P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C3P1 Gene

Publications for C3P1 Gene

  1. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 4
  3. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J … Lucas SM (Nature 2004) 4
  4. A genomic analysis of rat proteases and protease inhibitors. (PMID: 15060002) Puente XS … López-Otín C (Genome research 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for C3P1 gene in Mastermind

Products for C3P1 Gene

Sources for C3P1 Gene