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Aliases for C2orf92 Gene

Aliases for C2orf92 Gene

  • Chromosome 2 Open Reading Frame 92 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1125 2 3 4
  • LINC01125 3 4
  • Chromosome 2 Open Reading Frame Tmp707110 2
  • Uncharacterized Protein C2orf92 3

External Ids for C2orf92 Gene

Previous HGNC Symbols for C2orf92 Gene

  • LINC01125

Summaries for C2orf92 Gene

GeneCards Summary for C2orf92 Gene

C2orf92 (Chromosome 2 Open Reading Frame 92) is a Protein Coding gene.

Additional gene information for C2orf92 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C2orf92 Gene

Genomics for C2orf92 Gene

GeneHancer (GH) Regulatory Elements for C2orf92 Gene

Promoters and enhancers for C2orf92 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J097660 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 655.7 -1.4 -1423 5 HDGF PKNOX1 CLOCK SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZBTB7B IRF4 C2orf92 GC02M097664 ACTR1B ANKRD36B TMEM131 ZAP70 UNC50 CNNM3 LOC100506123 RNU4-8P
GH02J097588 Promoter/Enhancer 1.5 Ensembl ENCODE 12.1 -74.1 -74133 3 HDGF PKNOX1 ATF1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF48 ANKRD36B COX5B C2orf92 ACTR1B RNU4-8P ZAP70 PIR49158
GH02J097725 Enhancer 1 Ensembl ENCODE dbSUPER 16.6 +62.9 62895 3.6 BCOR MEIS2 ZMYM3 GABPA ZNF217 CTBP1 ATF4 JUND POLR2A ADNP ACTR1B C2orf92 COX5B RNU4-8P ANKRD36B LOC100506123 ZAP70 HMGN1P36
GH02J097712 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.9 +52.0 52008 7.6 PKNOX1 ATF1 TCF12 ZNF766 CAVIN1 ZNF592 KAT8 MEF2D MIER3 SMARCA4 ZAP70 ANKRD36B LMAN2L UNC50 ACTR1B ANKRD36 CNNM3 SEMA4C TMEM131 FAHD2B
GH02J097644 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 5.4 -18.1 -18058 2.8 HDGF PKNOX1 SMAD1 ZFP64 ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 PIR38581 COX5B ACTR1B UNC50 TMEM131 ANKRD36 ANKRD36B LOC100506123 C2orf92
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C2orf92 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C2orf92 Gene

Genomic Locations for C2orf92 Gene
chr2:97,664,217-97,703,066
(GRCh38/hg38)
Size:
38,850 bases
Orientation:
Plus strand
chr2:98,280,680-98,319,529
(GRCh37/hg19)

Genomic View for C2orf92 Gene

Genes around C2orf92 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C2orf92 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C2orf92 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C2orf92 Gene

Proteins for C2orf92 Gene

  • Protein details for C2orf92 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A0A1B0GVN3-CB092_HUMAN
    Recommended name:
    Uncharacterized protein C2orf92
    Protein Accession:
    A0A1B0GVN3

    Protein attributes for C2orf92 Gene

    Size:
    265 amino acids
    Molecular mass:
    30198 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C2orf92 Gene

Post-translational modifications for C2orf92 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C2orf92 Gene

Domains & Families for C2orf92 Gene

Gene Families for C2orf92 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins
  • Predicted secreted proteins

Protein Domains for C2orf92 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C2orf92: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C2orf92 Gene

Function for C2orf92 Gene

Phenotypes From GWAS Catalog for C2orf92 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C2orf92 Gene

Localization for C2orf92 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C2orf92 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for C2orf92 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with C2orf92: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for C2orf92 Gene

Pathways & Interactions for C2orf92 Gene

SuperPathways for C2orf92 Gene

No Data Available

Interacting Proteins for C2orf92 Gene

Gene Ontology (GO) - Biological Process for C2orf92 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C2orf92 Gene

Drugs & Compounds for C2orf92 Gene

No Compound Related Data Available

Transcripts for C2orf92 Gene

mRNA/cDNA for C2orf92 Gene

(9) REFSEQ mRNAs :
(58) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C2orf92 Gene

No ASD Table

Relevant External Links for C2orf92 Gene

GeneLoc Exon Structure for
C2orf92
ECgene alternative splicing isoforms for
C2orf92

Expression for C2orf92 Gene

NURSA nuclear receptor signaling pathways regulating expression of C2orf92 Gene:

C2orf92
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C2orf92 Gene

Orthologs for C2orf92 Gene

Evolution for C2orf92 Gene

ENSEMBL:
Gene Tree for C2orf92 (if available)
TreeFam:
Gene Tree for C2orf92 (if available)

No data available for Orthologs for C2orf92 Gene

Paralogs for C2orf92 Gene

No data available for Paralogs for C2orf92 Gene

Variants for C2orf92 Gene

Sequence variations from dbSNP and Humsavar for C2orf92 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000071420 -- 97,700,311(+) ACACACAC/ACACAC intron_variant
rs1000133220 -- 97,698,707(+) A/G intron_variant
rs1000201297 -- 97,671,963(+) C/T intron_variant
rs1000311706 -- 97,679,846(+) AAAAAAAAGAAAAAAAAGAAAAA/AAAAAAAAGAAAAA intron_variant
rs1000323352 -- 97,679,937(+) G/A/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C2orf92 Gene

Variant ID Type Subtype PubMed ID
esv2759077 CNV gain+loss 17122850
esv33510 CNV gain 17666407
esv3591718 CNV gain 21293372
nsv2837 CNV insertion 18451855
nsv963670 CNV duplication 23825009

Additional Variant Information for C2orf92 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C2orf92

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C2orf92 Gene

Disorders for C2orf92 Gene

No disorders were found for C2orf92 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C2orf92 Gene

Publications for C2orf92 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier LW … Wilson RK (Nature 2005) 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for C2orf92 Gene

Sources for C2orf92 Gene

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