Aliases for C2CD4D-AS1 Gene

Subcategory (RNA class) for C2CD4D-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for C2CD4D-AS1 Gene

  • C2CD4D And THEM5 Antisense RNA 1 2 3 5
  • HSALNG0007192 169
  • NONHSAG002940 94
  • Lnc-OAZ3-2 170

External Ids for C2CD4D-AS1 Gene

Summaries for C2CD4D-AS1 Gene

GeneCards Summary for C2CD4D-AS1 Gene

C2CD4D-AS1 (C2CD4D And THEM5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for C2CD4D-AS1 Gene

Additional gene information for C2CD4D-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for C2CD4D-AS1 Gene

Genomics for C2CD4D-AS1 Gene

GeneHancer (GH) Regulatory Elements for C2CD4D-AS1 Gene

Promoters and enhancers for C2CD4D-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C2CD4D-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C2CD4D-AS1 Gene

Genomic Locations for C2CD4D-AS1 Gene
chr1:151,838,277-151,854,041
(GRCh38/hg38)
Size:
15,765 bases
Orientation:
Plus strand
chr1:151,810,945-151,822,861
(GRCh37/hg19)
Size:
11,917 bases
Orientation:
Plus strand

Genomic View for C2CD4D-AS1 Gene

Genes around C2CD4D-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C2CD4D-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C2CD4D-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C2CD4D-AS1 Gene

Proteins for C2CD4D-AS1 Gene

Post-translational modifications for C2CD4D-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C2CD4D-AS1 Gene

Domains & Families for C2CD4D-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C2CD4D-AS1 Gene

Function for C2CD4D-AS1 Gene

Phenotypes From GWAS Catalog for C2CD4D-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C2CD4D-AS1 Gene

Localization for C2CD4D-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C2CD4D-AS1 Gene

Pathways & Interactions for C2CD4D-AS1 Gene

PathCards logo

SuperPathways for C2CD4D-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C2CD4D-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C2CD4D-AS1 Gene

Drugs & Compounds for C2CD4D-AS1 Gene

No Compound Related Data Available

Transcripts for C2CD4D-AS1 Gene

mRNA/cDNA for C2CD4D-AS1 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(12) RNACentral transcripts :
(4) LNCipedia transcripts :
(7) NONCODE transcripts :
(4) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for C2CD4D-AS1 Gene

No ASD Table

Relevant External Links for C2CD4D-AS1 Gene

GeneLoc Exon Structure for
C2CD4D-AS1
ECgene alternative splicing isoforms for
C2CD4D-AS1

Expression for C2CD4D-AS1 Gene

SOURCE GeneReport for Unigene cluster for C2CD4D-AS1 Gene:

Hs.697059
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C2CD4D-AS1 Gene

Orthologs for C2CD4D-AS1 Gene

Evolution for C2CD4D-AS1 Gene

ENSEMBL:
Gene Tree for C2CD4D-AS1 (if available)
TreeFam:
Gene Tree for C2CD4D-AS1 (if available)

No data available for Orthologs for C2CD4D-AS1 Gene

Paralogs for C2CD4D-AS1 Gene

No data available for Paralogs for C2CD4D-AS1 Gene

Variants for C2CD4D-AS1 Gene

Sequence variations from dbSNP and Humsavar for C2CD4D-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000047555 -- 151,842,631(+) A/T intron_variant
rs1000200792 -- 151,842,761(+) A/G intron_variant
rs1000293983 -- 151,837,345(+) G/A upstream_transcript_variant
rs1000482938 -- 151,842,409(+) A/G intron_variant
rs1000610431 -- 151,850,936(+) A/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for C2CD4D-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1126220 CNV deletion 24896259
nsv516369 CNV gain 19592680

Additional Variant Information for C2CD4D-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C2CD4D-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C2CD4D-AS1 Gene

Disorders for C2CD4D-AS1 Gene

No disorders were found for C2CD4D-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for C2CD4D-AS1 Gene

Publications for C2CD4D-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

No data available for External Links for C2CD4D-AS1 Gene

Products for C2CD4D-AS1 Gene

Sources for C2CD4D-AS1 Gene