Aliases for C2CD4D-AS1 Gene

Subcategory (RNA class) for C2CD4D-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for C2CD4D-AS1 Gene

  • C2CD4D And THEM5 Antisense RNA 1 2 3 5
  • C2CD4D-AS1 2 5
  • NONHSAG002940.2 91
  • HSALNG0007192 164
  • Lnc-OAZ3-2 165

External Ids for C2CD4D-AS1 Gene

Summaries for C2CD4D-AS1 Gene

GeneCards Summary for C2CD4D-AS1 Gene

C2CD4D-AS1 (C2CD4D And THEM5 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for C2CD4D-AS1 Gene

Additional gene information for C2CD4D-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for C2CD4D-AS1 Gene

Genomics for C2CD4D-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for C2CD4D-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J151835 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 600.7 -0.2 -157 6 CREB1 GATAD2A CTCF PRDM10 BACH1 TARDBP JUND FOXA1 LARP7 ZNF143 C2CD4D-AS1 MRPL9 POGZ SETDB1 ARNT PIP5K1A LYSMD1 GABPB2 TDRKH TDRKH-AS1
GH01J151841 Promoter 0.3 EPDnew 600.7 +3.6 3614 0.1 C2CD4D C2CD4D-AS1 ENSG00000201134 THEM5
GH01J151721 Promoter/Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 10.1 -117.9 -117876 3.2 RFX1 FOXA1 POLR2A EZH2 YY1 PKNOX1 SCRT2 RFX3 SIN3A BMI1 lnc-CELF3-1 SNX27 MRPL9 OAZ3 ENSG00000232937 ENSG00000250734 CGN ENSG00000252840 C2CD4D-AS1 C2CD4D
GH01J151974 Enhancer 1.2 Ensembl ENCODE dbSUPER 10 +138.6 138643 4.6 GATAD2A ZNF629 IKZF1 RCOR2 JUND ZIC2 POLR2A ZNF24 MTA1 IRF2 THEM4 PIP5K1A THEM5 C2CD4D C2CD4D-AS1 ENSG00000201134 S100A11 ENSG00000252840 CGN LINGO4
GH01J151919 Enhancer 1.2 FANTOM5 Ensembl ENCODE 10 +80.1 80124 8.8 IKZF1 FOXA1 PKNOX1 REST IKZF2 POLR2A SP1 TRIM22 HDAC1 SCRT2 ENSG00000229021 THEM4 S100A10 THEM5 C2CD4D ENSG00000201134 C2CD4D-AS1 LINGO4 C1orf56 TMOD4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C2CD4D-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for C2CD4D-AS1 Gene

Genomic Locations for C2CD4D-AS1 Gene
chr1:151,838,277-151,854,041
(GRCh38/hg38)
Size:
15,765 bases
Orientation:
Plus strand
chr1:151,810,945-151,822,861
(GRCh37/hg19)
Size:
11,917 bases
Orientation:
Plus strand

Genomic View for C2CD4D-AS1 Gene

Genes around C2CD4D-AS1 on UCSC Golden Path with GeneCards custom track
C2CD4D-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
C2CD4D-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C2CD4D-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C2CD4D-AS1 Gene

Proteins for C2CD4D-AS1 Gene

Post-translational modifications for C2CD4D-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C2CD4D-AS1 Gene

Domains & Families for C2CD4D-AS1 Gene

Gene Families for C2CD4D-AS1 Gene

genes like me logo Genes that share domains with C2CD4D-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C2CD4D-AS1 Gene

Function for C2CD4D-AS1 Gene

Phenotypes From GWAS Catalog for C2CD4D-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C2CD4D-AS1 Gene

Localization for C2CD4D-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C2CD4D-AS1 Gene

Pathways & Interactions for C2CD4D-AS1 Gene

PathCards logo

SuperPathways for C2CD4D-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C2CD4D-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C2CD4D-AS1 Gene

Drugs & Compounds for C2CD4D-AS1 Gene

No Compound Related Data Available

Transcripts for C2CD4D-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for C2CD4D-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000605F19_9606 lncRNA 506 3

Ensembl: ENST00000434182 (view in UCSC) ,

LncBook: HSALNT0015199,

LNCipedia: lnc-OAZ3-2:1,

URS0000CCDFFE_9606 lncRNA 2253 2

HGNC: 54045,

RefSeq: NR_152846,

URS0000CCE02A_9606 lncRNA 2333 1

RefSeq: NR_024237,

URS00008BCABC_9606 lncRNA 1502 2

LncBook: HSALNT0015200,

NONCODE: NONHSAT006443.2,

URS00009B53AB_9606 lncRNA 785 2

LncBook: HSALNT0015186,

NONCODE: NONHSAT149808.1,

C2CD4D-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for C2CD4D-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for C2CD4D-AS1 Gene

No ASD Table

Relevant External Links for C2CD4D-AS1 Gene

GeneLoc Exon Structure for
C2CD4D-AS1

Expression for C2CD4D-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C2CD4D-AS1

SOURCE GeneReport for Unigene cluster for C2CD4D-AS1 Gene:

Hs.697059
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C2CD4D-AS1 Gene

Orthologs for C2CD4D-AS1 Gene

Evolution for C2CD4D-AS1 Gene

ENSEMBL:
Gene Tree for C2CD4D-AS1 (if available)
TreeFam:
Gene Tree for C2CD4D-AS1 (if available)

No data available for Orthologs for C2CD4D-AS1 Gene

Paralogs for C2CD4D-AS1 Gene

No data available for Paralogs for C2CD4D-AS1 Gene

Variants for C2CD4D-AS1 Gene

Additional dbSNP identifiers (rs#s) for C2CD4D-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for C2CD4D-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1126220 CNV deletion 24896259
nsv516369 CNV gain 19592680

Additional Variant Information for C2CD4D-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C2CD4D-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for C2CD4D-AS1 Gene

Disorders for C2CD4D-AS1 Gene

Additional Disease Information for C2CD4D-AS1

No disorders were found for C2CD4D-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C2CD4D-AS1 Gene

Publications for C2CD4D-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for C2CD4D-AS1 Gene

Products for C2CD4D-AS1 Gene

Sources for C2CD4D-AS1 Gene