Aliases for C21orf91-OT1 Gene

Subcategory (RNA class) for C21orf91-OT1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for C21orf91-OT1 Gene

  • C21orf91 Overlapping Transcript 1 2 3 5
  • C21orf91 Overlapping Transcript 1 (Non-Protein Coding) 2 3
  • C21orf91-OT1 2 170
  • Non-Protein Coding RNA 285 2
  • HSALNG0132117 169
  • NONHSAG032447 94
  • NCRNA00285 3
  • D21S2089E 3

External Ids for C21orf91-OT1 Gene

Previous HGNC Symbols for C21orf91-OT1 Gene

  • NCRNA00285

Previous GeneCards Identifiers for C21orf91-OT1 Gene

  • GC21U900433
  • GC21M019137

Summaries for C21orf91-OT1 Gene

GeneCards Summary for C21orf91-OT1 Gene

C21orf91-OT1 (C21orf91 Overlapping Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for C21orf91-OT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C21orf91-OT1 Gene

Genomics for C21orf91-OT1 Gene

GeneHancer (GH) Regulatory Elements for C21orf91-OT1 Gene

Promoters and enhancers for C21orf91-OT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J017791 Enhancer 0.2 dbSUPER 769.5 +0.5 459 1 C21orf91-OT1 ENSG00000244676 piR-59297-425 C21orf91
GH21J017780 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 19.1 +8.6 8556 8.3 ZNF24 SP1 JUND ETV6 RELA HLF CEBPG MLLT1 ZNF687 CREM C21orf91-OT1 C21orf91 BTG3 piR-59297-425
GH21J017817 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.2 -26.3 -26284 5.2 ZNF24 SP1 ZBTB40 SREBF1 FOXA1 POLR2A HCFC1 L3MBTL2 MAX RAD21 CHODL C21orf91 lnc-BTG3-7 C21orf91-OT1 ENSG00000244676
GH21J017793 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 14.9 -2.4 -2379 3.7 LCORL ETV6 HLF RAD21 SP1 CEBPG ZNF687 CEBPA RXRA GATAD2A ENSG00000244676 C21orf91-OT1 C21orf91 lnc-BTG3-7
GH21J017788 Enhancer 0.8 ENCODE dbSUPER 19.1 +2.7 2693 2.5 ZNF24 ETV6 RELA MLLT1 CREM ZBED1 IKZF1 TRIM22 IKZF2 CBFB C21orf91-OT1 CHODL piR-59297-425 C21orf91
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C21orf91-OT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C21orf91-OT1 Gene

Genomic Locations for C21orf91-OT1 Gene
chr21:17,763,315-17,792,523
(GRCh38/hg38)
Size:
29,209 bases
Orientation:
Minus strand
chr21:19,135,632-19,164,840
(GRCh37/hg19)
Size:
29,209 bases
Orientation:
Minus strand

Genomic View for C21orf91-OT1 Gene

Genes around C21orf91-OT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C21orf91-OT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C21orf91-OT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C21orf91-OT1 Gene

Proteins for C21orf91-OT1 Gene

Post-translational modifications for C21orf91-OT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C21orf91-OT1 Gene

Domains & Families for C21orf91-OT1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C21orf91-OT1 Gene

Function for C21orf91-OT1 Gene

Phenotypes From GWAS Catalog for C21orf91-OT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C21orf91-OT1 Gene

Localization for C21orf91-OT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C21orf91-OT1 Gene

Pathways & Interactions for C21orf91-OT1 Gene

PathCards logo

SuperPathways for C21orf91-OT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C21orf91-OT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C21orf91-OT1 Gene

Drugs & Compounds for C21orf91-OT1 Gene

No Compound Related Data Available

Transcripts for C21orf91-OT1 Gene

mRNA/cDNA for C21orf91-OT1 Gene

(2) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(3) NONCODE transcripts :
(3) LNCipedia transcripts :
(3) LncBook transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for C21orf91-OT1 Gene

No ASD Table

Relevant External Links for C21orf91-OT1 Gene

GeneLoc Exon Structure for
C21orf91-OT1
ECgene alternative splicing isoforms for
C21orf91-OT1

Expression for C21orf91-OT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C21orf91-OT1 Gene

mRNA differential expression in normal tissues according to GTEx for C21orf91-OT1 Gene

This gene is overexpressed in Testis (x10.0) and Brain - Spinal cord (cervical c-1) (x4.1).

SOURCE GeneReport for Unigene cluster for C21orf91-OT1 Gene:

Hs.473425
genes like me logo Genes that share expression patterns with C21orf91-OT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C21orf91-OT1 Gene

Orthologs for C21orf91-OT1 Gene

Evolution for C21orf91-OT1 Gene

ENSEMBL:
Gene Tree for C21orf91-OT1 (if available)
TreeFam:
Gene Tree for C21orf91-OT1 (if available)

No data available for Orthologs for C21orf91-OT1 Gene

Paralogs for C21orf91-OT1 Gene

No data available for Paralogs for C21orf91-OT1 Gene

Variants for C21orf91-OT1 Gene

Sequence variations from dbSNP and Humsavar for C21orf91-OT1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000348211 -- 17,792,743(-) T/C upstream_transcript_variant
rs1000974874 -- 17,780,469(-) T/C intron_variant
rs1000978063 -- 17,778,996(-) T/C intron_variant
rs1000987064 -- 17,784,875(-) A/G intron_variant
rs1001128443 -- 17,787,103(-) C/A/G/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for C21orf91-OT1 Gene

Variant ID Type Subtype PubMed ID
nsv1059861 CNV loss 25217958
nsv834055 CNV gain 17160897
nsv953347 CNV duplication 24416366

Additional Variant Information for C21orf91-OT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C21orf91-OT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C21orf91-OT1 Gene

Disorders for C21orf91-OT1 Gene

Additional Disease Information for C21orf91-OT1

No disorders were found for C21orf91-OT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C21orf91-OT1 Gene

Publications for C21orf91-OT1 Gene

  1. Nineteen additional unpredicted transcripts from human chromosome 21. (PMID: 12036297) Reymond A … Antonarakis SE (Genomics 2002) 2 3 56

No data available for External Links for C21orf91-OT1 Gene

Products for C21orf91-OT1 Gene

Sources for C21orf91-OT1 Gene