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Aliases for C20orf78 Gene

Aliases for C20orf78 Gene

  • Chromosome 20 Open Reading Frame 78 2 3 5

External Ids for C20orf78 Gene

Previous GeneCards Identifiers for C20orf78 Gene

  • GC20M018778
  • GC20M018738
  • GC20M018785
  • GC20U900203

Summaries for C20orf78 Gene

GeneCards Summary for C20orf78 Gene

C20orf78 (Chromosome 20 Open Reading Frame 78) is a Protein Coding gene.

Additional gene information for C20orf78 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf78 Gene

Genomics for C20orf78 Gene

GeneHancer (GH) Regulatory Elements for C20orf78 Gene

Promoters and enhancers for C20orf78 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I018813 Promoter 0.5 EPDnew 0.4 +16.4 16439 0.1 SCP2D1 C20orf78
GH20I018839 Enhancer 0.2 ENCODE 0.4 -9.8 -9849 0.2 C20orf78 PIR45305
GH20I018837 Enhancer 0.2 ENCODE 0.4 -7.7 -7709 0.1 C20orf78 PIR45305
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C20orf78 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C20orf78 Gene

Genomic Locations for C20orf78 Gene
20,853 bases
Minus strand

Genomic View for C20orf78 Gene

Genes around C20orf78 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C20orf78 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C20orf78 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf78 Gene

Proteins for C20orf78 Gene

  • Protein details for C20orf78 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein C20orf78
    Protein Accession:

    Protein attributes for C20orf78 Gene

    151 amino acids
    Molecular mass:
    17183 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf78 Gene

Post-translational modifications for C20orf78 Gene

No Post-translational modifications

Other Protein References for C20orf78 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C20orf78 Gene

Domains & Families for C20orf78 Gene

Protein Domains for C20orf78 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf78: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C20orf78 Gene

Function for C20orf78 Gene

Phenotypes From GWAS Catalog for C20orf78 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C20orf78 Gene

Localization for C20orf78 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C20orf78 gene
Compartment Confidence
nucleus 3
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C20orf78 Gene

Pathways & Interactions for C20orf78 Gene

SuperPathways for C20orf78 Gene

No Data Available

Interacting Proteins for C20orf78 Gene

Gene Ontology (GO) - Biological Process for C20orf78 Gene


No data available for Pathways by source and SIGNOR curated interactions for C20orf78 Gene

Drugs & Compounds for C20orf78 Gene

No Compound Related Data Available

Transcripts for C20orf78 Gene

mRNA/cDNA for C20orf78 Gene

(2) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C20orf78 Gene

Chromosome 20 open reading frame 78:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf78 Gene

No ASD Table

Relevant External Links for C20orf78 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C20orf78 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C20orf78 Gene

mRNA differential expression in normal tissues according to GTEx for C20orf78 Gene

This gene is overexpressed in Testis (x52.2).

NURSA nuclear receptor signaling pathways regulating expression of C20orf78 Gene:


SOURCE GeneReport for Unigene cluster for C20orf78 Gene:

genes like me logo Genes that share expression patterns with C20orf78: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C20orf78 Gene

Orthologs for C20orf78 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C20orf78 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C20orf78 34
  • 99 (a)
C20H20orf78 33
  • 98.9 (n)
Species where no ortholog for C20orf78 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf78 Gene

Gene Tree for C20orf78 (if available)
Gene Tree for C20orf78 (if available)

Paralogs for C20orf78 Gene

No data available for Paralogs for C20orf78 Gene

Variants for C20orf78 Gene

Sequence variations from dbSNP and Humsavar for C20orf78 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000080160 -- 18,830,561(-) C/A upstream_transcript_variant
rs1000100964 -- 18,810,571(-) C/T intron_variant
rs1000363150 -- 18,817,298(-) G/A intron_variant
rs1000394007 -- 18,809,728(-) A/G 3_prime_UTR_variant
rs1000432439 -- 18,825,371(-) A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C20orf78 Gene

Variant ID Type Subtype PubMed ID
nsv833934 CNV loss 17160897

Variation tolerance for C20orf78 Gene

Gene Damage Index Score: 1.08; 21.98% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C20orf78 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C20orf78 Gene

Disorders for C20orf78 Gene

Additional Disease Information for C20orf78

No disorders were found for C20orf78 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C20orf78 Gene

Publications for C20orf78 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P … Rogers J (Nature 2001) 2 3 4 58

Products for C20orf78 Gene

Sources for C20orf78 Gene

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