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Aliases for C20orf202 Gene

Aliases for C20orf202 Gene

  • Chromosome 20 Open Reading Frame 202 2 3 5
  • Uncharacterized Protein C20orf202 3

External Ids for C20orf202 Gene

Previous GeneCards Identifiers for C20orf202 Gene

  • GC20P001134
  • GC20P001184
  • GC20P001135

Summaries for C20orf202 Gene

GeneCards Summary for C20orf202 Gene

C20orf202 (Chromosome 20 Open Reading Frame 202) is a Protein Coding gene.

Additional gene information for C20orf202 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C20orf202 Gene

Genomics for C20orf202 Gene

GeneHancer (GH) Regulatory Elements for C20orf202 Gene

Promoters and enhancers for C20orf202 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J001135 Promoter 0.5 EPDnew 650.2 -68.2 -68248 0.1 C20orf202 LOC105372493 PSMF1 ACTG1P3
GH20J001108 Enhancer 0.6 ENCODE 11.1 -94.8 -94841 0.2 GATAD2A CTCF ZNF654 FOXA3 REST ZNF48 RAD21 XRCC5 MIER3 ZBTB48 C20orf202 RSPO4 TMEM74B PSMF1 GC20P001101 LOC105372493
GH20J001278 Enhancer 0.4 FANTOM5 dbSUPER 1.6 +75.1 75113 0.1 RAD21L1 SDCBP2 FKBP1A TMEM74B C20orf202 PIR62557 SNPH ENSG00000280162
GH20J001144 Enhancer 0.2 FANTOM5 2 -59.2 -59207 0.2 PSMF1 RSPO4 TMEM74B C20orf202 SCRT2 ACTG1P3 LOC105372493
GH20J001213 Enhancer 0.9 ENCODE 0.4 +9.7 9658 0.2 FOXA2 ARID4B SIN3A ZNF2 IRF4 SLC30A9 ZNF143 MXD4 REST MIER2 C20orf202 RAD21L1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C20orf202 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C20orf202 Gene

Genomic Locations for C20orf202 Gene
chr20:1,203,454-1,208,274
(GRCh38/hg38)
Size:
4,821 bases
Orientation:
Plus strand
chr20:1,184,098-1,188,918
(GRCh37/hg19)
Size:
4,821 bases
Orientation:
Plus strand

Genomic View for C20orf202 Gene

Genes around C20orf202 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C20orf202 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C20orf202 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf202 Gene

Proteins for C20orf202 Gene

  • Protein details for C20orf202 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A1L168-CT202_HUMAN
    Recommended name:
    Uncharacterized protein C20orf202
    Protein Accession:
    A1L168

    Protein attributes for C20orf202 Gene

    Size:
    122 amino acids
    Molecular mass:
    13591 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf202 Gene

Post-translational modifications for C20orf202 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C20orf202 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C20orf202 Gene

Domains & Families for C20orf202 Gene

Gene Families for C20orf202 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C20orf202 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C20orf202: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C20orf202 Gene

Function for C20orf202 Gene

Phenotypes From GWAS Catalog for C20orf202 Gene

genes like me logo Genes that share phenotypes with C20orf202: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C20orf202 Gene

Localization for C20orf202 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C20orf202 gene
Compartment Confidence
nucleus 2
extracellular 1
mitochondrion 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C20orf202 Gene

Pathways & Interactions for C20orf202 Gene

SuperPathways for C20orf202 Gene

No Data Available

Interacting Proteins for C20orf202 Gene

Gene Ontology (GO) - Biological Process for C20orf202 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C20orf202 Gene

Drugs & Compounds for C20orf202 Gene

No Compound Related Data Available

Transcripts for C20orf202 Gene

mRNA/cDNA for C20orf202 Gene

(1) REFSEQ mRNAs :
(8) Additional mRNA sequences :
(5) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C20orf202 Gene

Chromosome 20 open reading frame 202:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf202 Gene

No ASD Table

Relevant External Links for C20orf202 Gene

GeneLoc Exon Structure for
C20orf202
ECgene alternative splicing isoforms for
C20orf202

Expression for C20orf202 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C20orf202 Gene

NURSA nuclear receptor signaling pathways regulating expression of C20orf202 Gene:

C20orf202

SOURCE GeneReport for Unigene cluster for C20orf202 Gene:

Hs.148503
genes like me logo Genes that share expression patterns with C20orf202: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C20orf202 Gene

Orthologs for C20orf202 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C20orf202 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf202 33
  • 99.45 (n)
C20orf202 34
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C24H20orf202 33
  • 84.33 (n)
cow
(Bos Taurus)
Mammalia C13H20orf202 33
  • 84.18 (n)
mouse
(Mus musculus)
Mammalia Tmem74bos 16 33
  • 76.39 (n)
rat
(Rattus norvegicus)
Mammalia Tmem74bos 33
  • 75.63 (n)
Species where no ortholog for C20orf202 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf202 Gene

ENSEMBL:
Gene Tree for C20orf202 (if available)
TreeFam:
Gene Tree for C20orf202 (if available)

Paralogs for C20orf202 Gene

No data available for Paralogs for C20orf202 Gene

Variants for C20orf202 Gene

Sequence variations from dbSNP and Humsavar for C20orf202 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000142386 -- 1,205,897(+) A/C intron_variant
rs1001094902 -- 1,205,261(+) A/C intron_variant
rs1001317348 -- 1,207,369(+) A/G 3_prime_UTR_variant
rs1001927821 -- 1,201,538(+) T/C upstream_transcript_variant
rs1002095376 -- 1,203,343(+) G/A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for C20orf202 Gene

Variant ID Type Subtype PubMed ID
nsv1057097 CNV gain 25217958

Variation tolerance for C20orf202 Gene

Gene Damage Index Score: 2.42; 42.66% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C20orf202 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C20orf202

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C20orf202 Gene

Disorders for C20orf202 Gene

Additional Disease Information for C20orf202

No disorders were found for C20orf202 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C20orf202 Gene

Publications for C20orf202 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for C20orf202 Gene

Sources for C20orf202 Gene

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