Aliases for C20orf144 Gene

Aliases for C20orf144 Gene

  • Chromosome 20 Open Reading Frame 144 2 3 5
  • Bcl-2-Like Protein From Testis 2 3 4
  • Uncharacterized Protein C20orf144 3 4
  • Bclt 3 4
  • DJ63M2.6 3

External Ids for C20orf144 Gene

Previous GeneCards Identifiers for C20orf144 Gene

  • GC20P032008
  • GC20P032918
  • GC20P032965
  • GC20P031713
  • GC20P032250
  • GC20P029036

Summaries for C20orf144 Gene

GeneCards Summary for C20orf144 Gene

C20orf144 (Chromosome 20 Open Reading Frame 144) is a Protein Coding gene.

Additional gene information for C20orf144 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C20orf144 Gene

Genomics for C20orf144 Gene

GeneHancer (GH) Regulatory Elements for C20orf144 Gene

Promoters and enhancers for C20orf144 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C20orf144 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for C20orf144

Top Transcription factor binding sites by QIAGEN in the C20orf144 gene promoter:
  • AP-1
  • c-Fos
  • c-Jun
  • FosB
  • Fra-1
  • GATA-1
  • GATA-2
  • GATA-3
  • JunD
  • Zic3

Genomic Locations for C20orf144 Gene

Genomic Locations for C20orf144 Gene
chr20:33,662,286-33,665,619
(GRCh38/hg38)
Size:
3,334 bases
Orientation:
Plus strand
chr20:32,250,090-32,253,425
(GRCh37/hg19)
Size:
3,336 bases
Orientation:
Plus strand

Genomic View for C20orf144 Gene

Genes around C20orf144 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C20orf144 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C20orf144 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C20orf144 Gene

Proteins for C20orf144 Gene

  • Protein details for C20orf144 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BQM9-CT144_HUMAN
    Recommended name:
    Uncharacterized protein C20orf144
    Protein Accession:
    Q9BQM9
    Secondary Accessions:
    • Q1AHR2

    Protein attributes for C20orf144 Gene

    Size:
    153 amino acids
    Molecular mass:
    17214 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C20orf144 Gene

Post-translational modifications for C20orf144 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C20orf144 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C20orf144 Gene

Domains & Families for C20orf144 Gene

Gene Families for C20orf144 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C20orf144 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C20orf144 Gene

GenScript: Design optimal peptide antigens:
  • Chromosome 20 open reading frame 144 (Q1AHR2_HUMAN)
genes like me logo Genes that share domains with C20orf144: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C20orf144 Gene

Function for C20orf144 Gene

genes like me logo Genes that share phenotypes with C20orf144: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C20orf144 Gene

Localization for C20orf144 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C20orf144 gene
Compartment Confidence
nucleus 3
plasma membrane 1
peroxisome 1
endoplasmic reticulum 1
mitochondrion 0

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C20orf144 Gene

Pathways & Interactions for C20orf144 Gene

PathCards logo

SuperPathways for C20orf144 Gene

No Data Available

Interacting Proteins for C20orf144 Gene

;

Gene Ontology (GO) - Biological Process for C20orf144 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C20orf144 Gene

Drugs & Compounds for C20orf144 Gene

No Compound Related Data Available

Transcripts for C20orf144 Gene

mRNA/cDNA for C20orf144 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C20orf144 Gene

No ASD Table

Relevant External Links for C20orf144 Gene

GeneLoc Exon Structure for
C20orf144

Expression for C20orf144 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C20orf144 Gene

Protein differential expression in normal tissues from HIPED for C20orf144 Gene

This gene is overexpressed in Plasma (41.7), Testis (15.8), and Ovary (11.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C20orf144 Gene



Protein tissue co-expression partners for C20orf144 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C20orf144

SOURCE GeneReport for Unigene cluster for C20orf144 Gene:

Hs.324104

mRNA Expression by UniProt/SwissProt for C20orf144 Gene:

Q9BQM9-CT144_HUMAN
Tissue specificity: Preferentially expressed in the testis.
genes like me logo Genes that share expression patterns with C20orf144: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C20orf144 Gene

Orthologs for C20orf144 Gene

This gene was present in the common ancestor of mammals.

Orthologs for C20orf144 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20H20orf144 31 30
  • 97.33 (n)
OneToOne
cow
(Bos Taurus)
Mammalia C20orf144 31
  • 45 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700003F12Rik 31
  • 43 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C20orf144 31
  • 33 (a)
OneToOne
Species where no ortholog for C20orf144 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C20orf144 Gene

ENSEMBL:
Gene Tree for C20orf144 (if available)
TreeFam:
Gene Tree for C20orf144 (if available)

Paralogs for C20orf144 Gene

No data available for Paralogs for C20orf144 Gene

Variants for C20orf144 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for C20orf144 Gene

SNP ID Clinical significance and condition Chr 20 pos Variation AA Info Type
rs7260921 - p.Gln62Arg

Additional dbSNP identifiers (rs#s) for C20orf144 Gene

Structural Variations from Database of Genomic Variants (DGV) for C20orf144 Gene

Variant ID Type Subtype PubMed ID
dgv7560n54 CNV loss 21841781
nsv1065189 CNV loss 25217958
nsv585927 CNV loss 21841781
nsv833960 CNV loss 17160897
nsv833961 CNV loss 17160897
nsv954024 CNV deletion 24416366

Variation tolerance for C20orf144 Gene

Gene Damage Index Score: 6.36; 76.89% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C20orf144 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C20orf144

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C20orf144 Gene

Disorders for C20orf144 Gene

Additional Disease Information for C20orf144

No disorders were found for C20orf144 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C20orf144 Gene

Publications for C20orf144 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P … Rogers J (Nature 2001) 2 3 4 54
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for C20orf144 Gene

Sources for C20orf144 Gene