Aliases for C1orf21 Gene

Aliases for C1orf21 Gene

  • Chromosome 1 Open Reading Frame 21 2 3 5
  • Cell Proliferation-Inducing Gene 13 Protein 3 4
  • Proliferation-Inducing Protein 13 2 3
  • Uncharacterized Protein C1orf21 3 4
  • PIG13 3

External Ids for C1orf21 Gene

Previous GeneCards Identifiers for C1orf21 Gene

  • GC01P181882
  • GC01P179784
  • GC01P180876
  • GC01P181595
  • GC01P181087
  • GC01P182622
  • GC01P155591

Summaries for C1orf21 Gene

GeneCards Summary for C1orf21 Gene

C1orf21 (Chromosome 1 Open Reading Frame 21) is a Protein Coding gene. Diseases associated with C1orf21 include Renal Artery Atheroma and Cortical Thymoma.

Gene Wiki entry for C1orf21 Gene

Additional gene information for C1orf21 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C1orf21 Gene

Genomics for C1orf21 Gene

GeneHancer (GH) Regulatory Elements for C1orf21 Gene

Promoters and enhancers for C1orf21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J184385 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas 500.7 +1.0 1013 4.7 EP300 ZSCAN5C JUND TEAD4 ZFX ZNF639 ZIC2 POLR2A ZBTB10 ZNF423 ENSG00000271387 C1orf21 SMG7-AS1 SWT1 ENSG00000273004 SMG7 EDEM3 piR-41306-017
GH01J184453 Promoter 0.4 EPDnew 500.2 +65.3 65255 0.1 MZF1 C1orf21 lnc-TSEN15-5 RF00951-010
GH01J184415 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 17 +32.1 32085 7.8 ZNF217 ZSCAN5C CUX1 CTBP1 ZNF341 FOXA2 FOS NEUROD1 STAT3 FOXA1 C1orf21 COLGALT2 RF00951-010 ENSG00000230470
GH01J184478 Enhancer 1 Ensembl ENCODE dbSUPER 18.1 +96.5 96463 9.4 ZNF217 CUX1 CTBP1 CTCF NR2F2 ESRRA FOS NANOG SPI1 GATA3 C1orf21 lnc-TSEN15-5 LOC102724857
GH01J184490 Enhancer 1.1 ENCODE dbSUPER 16.5 +105.4 105435 4.5 POLR2G JUND FOS KDM6A ZBTB11 TEAD1 CTBP1 FOXA2 OSR2 KMT2B C1orf21 lnc-TSEN15-5 LOC102724857
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C1orf21 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for C1orf21

Top Transcription factor binding sites by QIAGEN in the C1orf21 gene promoter:
  • aMEF-2
  • AP-1
  • HFH-1
  • HOXA9
  • HOXA9B
  • MEF-2A
  • Meis-1
  • Meis-1b
  • NF-kappaB1
  • RORalpha1

Genomic Locations for C1orf21 Gene

Genomic Locations for C1orf21 Gene
chr1:184,387,016-184,629,021
(GRCh38/hg38)
Size:
242,006 bases
Orientation:
Plus strand
chr1:184,356,150-184,598,155
(GRCh37/hg19)
Size:
242,006 bases
Orientation:
Plus strand

Genomic View for C1orf21 Gene

Genes around C1orf21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1orf21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1orf21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1orf21 Gene

Proteins for C1orf21 Gene

  • Protein details for C1orf21 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H246-CA021_HUMAN
    Recommended name:
    Uncharacterized protein C1orf21
    Protein Accession:
    Q9H246
    Secondary Accessions:
    • B2R551

    Protein attributes for C1orf21 Gene

    Size:
    121 amino acids
    Molecular mass:
    13865 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C1orf21 Gene

Post-translational modifications for C1orf21 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1orf21 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1orf21 Gene

Domains & Families for C1orf21 Gene

Gene Families for C1orf21 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C1orf21 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for C1orf21 Gene

GenScript: Design optimal peptide antigens:
  • Chromosome 1 open reading frame 21 (B1AKK6_HUMAN)
  • Cell proliferation-inducing gene 13 protein (CA021_HUMAN)
genes like me logo Genes that share domains with C1orf21: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C1orf21 Gene

Function for C1orf21 Gene

Phenotypes From GWAS Catalog for C1orf21 Gene

Gene Ontology (GO) - Molecular Function for C1orf21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C1orf21: view
genes like me logo Genes that share phenotypes with C1orf21: view

Animal Model Products

CRISPR Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C1orf21 Gene

Localization for C1orf21 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C1orf21 gene
Compartment Confidence
nucleus 3
cytosol 3
mitochondrion 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nucleoplasm (2)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C1orf21 Gene

Pathways & Interactions for C1orf21 Gene

PathCards logo

SuperPathways for C1orf21 Gene

No Data Available

Interacting Proteins for C1orf21 Gene

;

Gene Ontology (GO) - Biological Process for C1orf21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1orf21 Gene

Drugs & Compounds for C1orf21 Gene

No Compound Related Data Available

Transcripts for C1orf21 Gene

mRNA/cDNA for C1orf21 Gene

1 REFSEQ mRNAs :
14 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C1orf21 Gene

No ASD Table

Relevant External Links for C1orf21 Gene

GeneLoc Exon Structure for
C1orf21

Expression for C1orf21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C1orf21 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C1orf21 Gene

This gene is overexpressed in Muscle - Skeletal (x5.1).

Protein differential expression in normal tissues from HIPED for C1orf21 Gene

This gene is overexpressed in Frontal cortex (35.0), Oral epithelium (11.7), Urinary Bladder (6.7), and Prostate (6.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C1orf21 Gene



Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C1orf21

SOURCE GeneReport for Unigene cluster for C1orf21 Gene:

Hs.497159

mRNA Expression by UniProt/SwissProt for C1orf21 Gene:

Q9H246-CA021_HUMAN
Tissue specificity: Expressed in spleen, prostate, testis and uterus.

Evidence on tissue expression from TISSUES for C1orf21 Gene

  • Nervous system(3.9)
  • Skin(2)
genes like me logo Genes that share expression patterns with C1orf21: view

No data available for Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1orf21 Gene

Orthologs for C1orf21 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1orf21 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1H1ORF21 31
  • 100 (a)
OneToOne
C1H1orf21 30
  • 99.72 (n)
cow
(Bos Taurus)
Mammalia C16H1ORF21 31
  • 99 (a)
OneToMany
C16H1orf21 30
  • 96.69 (n)
-- 31
  • 95 (a)
OneToMany
dog
(Canis familiaris)
Mammalia C1orf21 31
  • 99 (a)
OneToOne
C7H1orf21 30
  • 96.97 (n)
oppossum
(Monodelphis domestica)
Mammalia C1orf21 31
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700025G04Rik 17 31 30
  • 93.94 (n)
rat
(Rattus norvegicus)
Mammalia RGD1309104 30
  • 93.11 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia C1orf21 31
  • 92 (a)
OneToOne
chicken
(Gallus gallus)
Aves C1orf21 31
  • 93 (a)
OneToOne
C8H1ORF21 30
  • 92.84 (n)
lizard
(Anolis carolinensis)
Reptilia C1orf21 31
  • 93 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c1orf21 30
  • 75.21 (n)
African clawed frog
(Xenopus laevis)
Amphibia MGC69115 30
zebrafish
(Danio rerio)
Actinopterygii zgc:92140 30
  • 64.64 (n)
C2H1orf21 31
  • 59 (a)
OneToOne
Dr.20974 30
Species where no ortholog for C1orf21 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1orf21 Gene

ENSEMBL:
Gene Tree for C1orf21 (if available)
TreeFam:
Gene Tree for C1orf21 (if available)

Paralogs for C1orf21 Gene

No data available for Paralogs for C1orf21 Gene

Variants for C1orf21 Gene

Additional dbSNP identifiers (rs#s) for C1orf21 Gene

Structural Variations from Database of Genomic Variants (DGV) for C1orf21 Gene

Variant ID Type Subtype PubMed ID
dgv20n21 CNV loss 19592680
esv2668015 CNV deletion 23128226
esv2674731 CNV deletion 23128226
esv2720162 CNV deletion 23290073
esv3543567 CNV deletion 23714750
esv3588125 CNV loss 21293372
esv3588126 CNV loss 21293372
esv3588127 CNV loss 21293372
nsv1008237 CNV gain 25217958
nsv3821 CNV deletion 18451855
nsv478651 CNV novel sequence insertion 20440878
nsv832037 CNV gain 17160897

Variation tolerance for C1orf21 Gene

Residual Variation Intolerance Score: 55.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.15; 3.34% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C1orf21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1orf21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for C1orf21 Gene

Disorders for C1orf21 Gene

MalaCards: The human disease database

(4) MalaCards diseases for C1orf21 Gene - From: DISEASES

Disorder Aliases PubMed IDs
renal artery atheroma
  • atherosclerosis of renal artery
cortical thymoma
  • polygonal cell thymoma
dendritic cell thymoma
  • epithelioid thymoma
renal artery disease
  • renal vascular disease
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for C1orf21

genes like me logo Genes that share disorders with C1orf21: view

No data available for UniProtKB/Swiss-Prot and Genatlas for C1orf21 Gene

Publications for C1orf21 Gene

  1. Cloning and characterization of 13 novel transcripts and the human RGS8 gene from the 1q25 region encompassing the hereditary prostate cancer (HPC1) locus. (PMID: 11318611) Sood R … Carpten JD (Genomics 2001) 2 3 4 54
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 54
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 54
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 54
  5. The Functional Proximal Proteome of Oncogenic Ras Includes mTORC2. (PMID: 30639242) Kovalski JR … Khavari PA (Molecular cell 2019) 3 54

Products for C1orf21 Gene

Sources for C1orf21 Gene