Aliases for C1RL-AS1 Gene

Subcategory (RNA class) for C1RL-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for C1RL-AS1 Gene

  • C1RL Antisense RNA 1 2 3 5
  • C1RL-AS1 2 5 165
  • C1RL Antisense RNA 1 (Non-Protein Coding) 2 3
  • MATL2963 2 3
  • ABC12-49244600F4.3 3
  • NONHSAG010366.2 91
  • HSALNG0088972 164

External Ids for C1RL-AS1 Gene

Additional External Ids for C1RL-AS1 Gene

Previous GeneCards Identifiers for C1RL-AS1 Gene

  • GC12P007262
  • GC12P007128
  • GC12P007208
  • GC12P007618
  • GC12P007668
  • GC12P007698
  • GC12P007887
  • GC12P007266
  • GC12P007312
  • GC12P007361
  • GC12P007406
  • GC12P007449
  • GC12P007494
  • GC12P007537
  • GC12P007578

Summaries for C1RL-AS1 Gene

GeneCards Summary for C1RL-AS1 Gene

C1RL-AS1 (C1RL Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for C1RL-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C1RL-AS1 Gene

Genomics for C1RL-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for C1RL-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C1RL-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for C1RL-AS1 Gene

Genomic Locations for C1RL-AS1 Gene
chr12:7,108,052-7,128,333
(GRCh38/hg38)
Size:
20,282 bases
Orientation:
Plus strand
chr12:7,260,648-7,275,097
(GRCh37/hg19)
Size:
14,450 bases
Orientation:
Plus strand

Genomic View for C1RL-AS1 Gene

Genes around C1RL-AS1 on UCSC Golden Path with GeneCards custom track
C1RL-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
C1RL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1RL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1RL-AS1 Gene

Proteins for C1RL-AS1 Gene

Post-translational modifications for C1RL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1RL-AS1 Gene

Domains & Families for C1RL-AS1 Gene

Gene Families for C1RL-AS1 Gene

genes like me logo Genes that share domains with C1RL-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C1RL-AS1 Gene

Function for C1RL-AS1 Gene

Phenotypes From GWAS Catalog for C1RL-AS1 Gene

Phenotypes for C1RL-AS1 Gene

genes like me logo Genes that share phenotypes with C1RL-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1RL-AS1 Gene

Localization for C1RL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C1RL-AS1 Gene

Pathways & Interactions for C1RL-AS1 Gene

PathCards logo

SuperPathways for C1RL-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C1RL-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C1RL-AS1 Gene

Drugs & Compounds for C1RL-AS1 Gene

No Compound Related Data Available

Transcripts for C1RL-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for C1RL-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000395467_9606 lncRNA 2086 4

Ensembl: ENST00000382215 (view in UCSC) , ENST00000672262 (view in UCSC) ,

LncBook: HSALNT0185035,

LNCipedia: C1RL-AS1:4,

NONCODE: NONHSAT026231.2,

URS0000308791_9606 lncRNA 572 4

Ensembl: ENST00000435921 (view in UCSC) , ENST00000672771 (view in UCSC) ,

LncBook: HSALNT0185031,

LNCipedia: C1RL-AS1:1,

NONCODE: NONHSAT026228.2,

URS00002A3A5F_9606 lncRNA 325 4

Ensembl: ENST00000535078 (view in UCSC) , ENST00000671698 (view in UCSC) ,

LncBook: HSALNT0185047,

LNCipedia: C1RL-AS1:8,

NONCODE: NONHSAT026236.2,

URS000058AD53_9606 lncRNA 550 3

Ensembl: ENST00000536679 (view in UCSC) , ENST00000672103 (view in UCSC) ,

LncBook: HSALNT0185036, HSALNT0185037,

LNCipedia: C1RL-AS1:3,

URS00001354AD_9606 lncRNA 5272 2

Ensembl: ENST00000541775 (view in UCSC) , ENST00000672085 (view in UCSC) ,

NONCODE: NONHSAT026230.2,

C1RL-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for C1RL-AS1 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for C1RL-AS1 Gene

No ASD Table

Relevant External Links for C1RL-AS1 Gene

GeneLoc Exon Structure for
C1RL-AS1

Expression for C1RL-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C1RL-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C1RL-AS1 Gene

This gene is overexpressed in Liver (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C1RL-AS1

SOURCE GeneReport for Unigene cluster for C1RL-AS1 Gene:

Hs.744212
genes like me logo Genes that share expression patterns with C1RL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1RL-AS1 Gene

Orthologs for C1RL-AS1 Gene

Evolution for C1RL-AS1 Gene

ENSEMBL:
Gene Tree for C1RL-AS1 (if available)
TreeFam:
Gene Tree for C1RL-AS1 (if available)

No data available for Orthologs for C1RL-AS1 Gene

Paralogs for C1RL-AS1 Gene

No data available for Paralogs for C1RL-AS1 Gene

Variants for C1RL-AS1 Gene

Additional dbSNP identifiers (rs#s) for C1RL-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for C1RL-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv481255 CNV novel sequence insertion 20440878

Additional Variant Information for C1RL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1RL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for C1RL-AS1 Gene

Disorders for C1RL-AS1 Gene

No disorders were found for C1RL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1RL-AS1 Gene

Publications for C1RL-AS1 Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3

Products for C1RL-AS1 Gene

Sources for C1RL-AS1 Gene