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Aliases for C1RL-AS1 Gene

Subcategory (RNA class) for C1RL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for C1RL-AS1 Gene

  • C1RL Antisense RNA 1 2 3 5
  • C1RL Antisense RNA 1 (Non-Protein Coding) 2 3
  • ABC12-49244600F4.3 3
  • MATL2963 3

External Ids for C1RL-AS1 Gene

Previous GeneCards Identifiers for C1RL-AS1 Gene

  • GC12P007262
  • GC12P007128
  • GC12P007208
  • GC12P007266
  • GC12P007312
  • GC12P007361
  • GC12P007406
  • GC12P007449
  • GC12P007494

Summaries for C1RL-AS1 Gene

GeneCards Summary for C1RL-AS1 Gene

C1RL-AS1 (C1RL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for C1RL-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1RL-AS1 Gene

Genomics for C1RL-AS1 Gene

GeneHancer (GH) Regulatory Elements for C1RL-AS1 Gene

Promoters and enhancers for C1RL-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J007107 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 655.9 +0.5 515 2.9 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 IRF4 YY1 POLR2B C1RL-AS1 C1RL ENSG00000256967 ZNF384 NCAPD2 SPSB2 ENSG00000219410 ENSG00000247853 PEX5 CLSTN3
GH12J006940 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 42.7 -154.4 -154394 25.9 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 PTPN6 C12orf57 EMG1 ZNF384 ENSG00000219410 ENSG00000247853 SPSB2 SCARNA12 NCAPD2 ENSG00000256967
GH12J006826 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 31.2 -279.4 -279354 3.7 HDGF ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 ZNF143 P3H3 ZNF384 ENSG00000219410 CHD4 ENSG00000247853 NCAPD2 ENSG00000256967 SPSB2 C1RL-AS1 NOP2
GH12J006762 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 21.1 -341.6 -341648 7.2 ZFP64 FEZF1 YY1 E2F8 ZNF143 SP3 NFYC MEF2D ZNF610 GLIS1 MLF2 PTMS ZNF384 ENSG00000219410 CHD4 ENSG00000247853 SPSB2 ENSG00000256967 ENSG00000126749 C1RL-AS1
GH12J006530 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 22.5 -571.0 -570956 12.8 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 GAPDH ENSG00000269968 GPR162 ZNF384 ENSG00000219410 CHD4 ENSG00000247853 NCAPD2 NOP2 SPSB2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C1RL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C1RL-AS1 Gene

Genomic Locations for C1RL-AS1 Gene
chr12:7,108,052-7,122,501
(GRCh38/hg38)
Size:
14,450 bases
Orientation:
Plus strand
chr12:7,260,648-7,275,097
(GRCh37/hg19)

Genomic View for C1RL-AS1 Gene

Genes around C1RL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1RL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1RL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1RL-AS1 Gene

Function for C1RL-AS1 Gene

Phenotypes From GWAS Catalog for C1RL-AS1 Gene

Phenotypes for C1RL-AS1 Gene

genes like me logo Genes that share phenotypes with C1RL-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1RL-AS1 Gene

Localization for C1RL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C1RL-AS1 Gene

Pathways & Interactions for C1RL-AS1 Gene

SuperPathways for C1RL-AS1 Gene

No Data Available

Interacting Proteins for C1RL-AS1 Gene

Gene Ontology (GO) - Biological Process for C1RL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1RL-AS1 Gene

Drugs & Compounds for C1RL-AS1 Gene

No Compound Related Data Available

Transcripts for C1RL-AS1 Gene

mRNA/cDNA for C1RL-AS1 Gene

(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(6) RNA Central transcripts :

Unigene Clusters for C1RL-AS1 Gene

C1RL antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for C1RL-AS1 Gene

No ASD Table

Relevant External Links for C1RL-AS1 Gene

GeneLoc Exon Structure for
C1RL-AS1
ECgene alternative splicing isoforms for
C1RL-AS1

Expression for C1RL-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1RL-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C1RL-AS1 Gene

This gene is overexpressed in Liver (x4.4).

SOURCE GeneReport for Unigene cluster for C1RL-AS1 Gene:

Hs.744212
genes like me logo Genes that share expression patterns with C1RL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1RL-AS1 Gene

Orthologs for C1RL-AS1 Gene

Evolution for C1RL-AS1 Gene

ENSEMBL:
Gene Tree for C1RL-AS1 (if available)
TreeFam:
Gene Tree for C1RL-AS1 (if available)

No data available for Orthologs for C1RL-AS1 Gene

Paralogs for C1RL-AS1 Gene

No data available for Paralogs for C1RL-AS1 Gene

Variants for C1RL-AS1 Gene

Sequence variations from dbSNP and Humsavar for C1RL-AS1 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000269680 -- 7,120,098(+) C/ intron_variant
rs1000470121 -- 7,115,067(+) C/G intron_variant
rs1000528676 -- 7,120,359(+) T/G intron_variant
rs1000595062 -- 7,121,725(+) A/G non_coding_transcript_variant
rs1000801708 -- 7,113,895(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C1RL-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv481255 CNV novel sequence insertion 20440878

Additional Variant Information for C1RL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1RL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for C1RL-AS1 Gene

Disorders for C1RL-AS1 Gene

Additional Disease Information for C1RL-AS1

No disorders were found for C1RL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1RL-AS1 Gene

Publications for C1RL-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 3 58

Products for C1RL-AS1 Gene

Sources for C1RL-AS1 Gene

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