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Aliases for C1QTNF9 Gene

Aliases for C1QTNF9 Gene

  • C1q And TNF Related 9 2 3 5
  • Complement C1q And Tumor Necrosis Factor-Related Protein 9 3 4
  • C1q And Tumor Necrosis Factor Related Protein 9 2 3
  • C1QTNF9A 3 4
  • Complement C1q And Tumor Necrosis Factor-Related Protein 9A 3
  • Complement C1q Tumor Necrosis Factor-Related Protein 9A 3
  • Complement C1q Tumor Necrosis Factor-Related Protein 9 3
  • CTRP9 3
  • AQL1 3

External Ids for C1QTNF9 Gene

Previous GeneCards Identifiers for C1QTNF9 Gene

  • GC13P023779
  • GC13P024881
  • GC13P005695

Summaries for C1QTNF9 Gene

GeneCards Summary for C1QTNF9 Gene

C1QTNF9 (C1q And TNF Related 9) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include hormone activity. An important paralog of this gene is C1QTNF9B.

UniProtKB/Swiss-Prot for C1QTNF9 Gene

  • Probable adipokine. Activates AMPK, AKT, and p44/42 MAPK signaling pathways (By similarity).

Additional gene information for C1QTNF9 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1QTNF9 Gene

Genomics for C1QTNF9 Gene

GeneHancer (GH) Regulatory Elements for C1QTNF9 Gene

Promoters and enhancers for C1QTNF9 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I024309 Promoter 0.5 EPDnew 550.8 +2.4 2395 0.1 C1QTNF9 C1QTNF9-AS1 ENSG00000273167
GH13I023887 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 43.2 -418.1 -418122 2.5 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 YY1 E2F8 ZNF143 FOS MIPEP PCOTH C1QTNF9
GH13I023866 Enhancer 1.1 FANTOM5 Ensembl ENCODE 39.8 -439.2 -439224 3.3 KLF1 TCF12 CTBP1 ZNF316 CBFA2T2 FOSL2 FOS NFE2 MAFK L3MBTL2 C1QTNF9 MIPEP PCOTH C1QTNF9B TNFRSF19 MTCO3P2
GH13I023792 Enhancer 1.2 Ensembl ENCODE dbSUPER 26.4 -512.1 -512109 4.9 PKNOX1 FOXA2 BMI1 FEZF1 BATF IRF4 RFX5 ATF7 FOS RUNX3 C1QTNF9 MIPEP MTCO3P2 PCOTH
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C1QTNF9 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the C1QTNF9 gene promoter:

Genomic Locations for C1QTNF9 Gene

Genomic Locations for C1QTNF9 Gene
15,370 bases
Plus strand

Genomic View for C1QTNF9 Gene

Genes around C1QTNF9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1QTNF9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1QTNF9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1QTNF9 Gene

Proteins for C1QTNF9 Gene

  • Protein details for C1QTNF9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Complement C1q and tumor necrosis factor-related protein 9A
    Protein Accession:
    Secondary Accessions:
    • A2A3T6
    • Q0VGC5
    • Q5VX65
    • Q5VX66
    • Q8IUU4

    Protein attributes for C1QTNF9 Gene

    333 amino acids
    Molecular mass:
    34681 Da
    Quaternary structure:
    • Multimers (predominantly trimers). Interacts with ADIPOQ via the C1q domain to form a heterotrimeric complex (By similarity). Interacts with CTRP9B. Forms heterotrimers and heterooligomeric complexes with CTRP9B.

neXtProt entry for C1QTNF9 Gene

Post-translational modifications for C1QTNF9 Gene

  • Glycosylation at Lys73 and posLast=127127
  • Modification sites at PhosphoSitePlus

Other Protein References for C1QTNF9 Gene

No data available for DME Specific Peptides for C1QTNF9 Gene

Domains & Families for C1QTNF9 Gene

Gene Families for C1QTNF9 Gene

Human Protein Atlas (HPA):
  • Predicted secreted proteins

Protein Domains for C1QTNF9 Gene

Suggested Antigen Peptide Sequences for C1QTNF9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C1QTNF9: view

No data available for UniProtKB/Swiss-Prot for C1QTNF9 Gene

Function for C1QTNF9 Gene

Molecular function for C1QTNF9 Gene

UniProtKB/Swiss-Prot Function:
Probable adipokine. Activates AMPK, AKT, and p44/42 MAPK signaling pathways (By similarity).

Phenotypes From GWAS Catalog for C1QTNF9 Gene

Gene Ontology (GO) - Molecular Function for C1QTNF9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005179 hormone activity IEA --
GO:0005515 protein binding IPI 19666007
GO:0042802 identical protein binding IPI 19666007
genes like me logo Genes that share ontologies with C1QTNF9: view

Phenotypes for C1QTNF9 Gene

genes like me logo Genes that share phenotypes with C1QTNF9: view

Animal Model Products

  • Taconic Biosciences Mouse Models for C1QTNF9

CRISPR Products

miRNA for C1QTNF9 Gene

miRTarBase miRNAs that target C1QTNF9

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C1QTNF9 Gene

Localization for C1QTNF9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1QTNF9 Gene


Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C1QTNF9 gene
Compartment Confidence
extracellular 5
mitochondrion 1
peroxisome 1
nucleus 1
endoplasmic reticulum 1
cytosol 1

Gene Ontology (GO) - Cellular Components for C1QTNF9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005581 collagen trimer IEA --
genes like me logo Genes that share ontologies with C1QTNF9: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for C1QTNF9 Gene

Pathways & Interactions for C1QTNF9 Gene

SuperPathways for C1QTNF9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C1QTNF9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010469 regulation of receptor activity IEA --
genes like me logo Genes that share ontologies with C1QTNF9: view

No data available for Pathways by source and SIGNOR curated interactions for C1QTNF9 Gene

Drugs & Compounds for C1QTNF9 Gene

No Compound Related Data Available

Transcripts for C1QTNF9 Gene

mRNA/cDNA for C1QTNF9 Gene

Unigene Clusters for C1QTNF9 Gene

C1q and tumor necrosis factor related protein 9:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C1QTNF9 Gene

No ASD Table

Relevant External Links for C1QTNF9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for C1QTNF9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1QTNF9 Gene

Protein differential expression in normal tissues from HIPED for C1QTNF9 Gene

This gene is overexpressed in Pancreatic juice (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for C1QTNF9 Gene

Protein tissue co-expression partners for C1QTNF9 Gene

NURSA nuclear receptor signaling pathways regulating expression of C1QTNF9 Gene:


SOURCE GeneReport for Unigene cluster for C1QTNF9 Gene:


mRNA Expression by UniProt/SwissProt for C1QTNF9 Gene:

Tissue specificity: Expressed predominantly in adipose tissue.

Evidence on tissue expression from TISSUES for C1QTNF9 Gene

  • Nervous system(4.1)
genes like me logo Genes that share expression patterns with C1QTNF9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1QTNF9 Gene

Orthologs for C1QTNF9 Gene

This gene was present in the common ancestor of chordates.

Orthologs for C1QTNF9 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C1QTNF9 33
  • 98.9 (n)
-- 34
  • 98 (a)
-- 34
  • 98 (a)
(Canis familiaris)
Mammalia -- 34
  • 89 (a)
(Bos Taurus)
Mammalia C1QTNF9 34
  • 85 (a)
(Mus musculus)
Mammalia C1qtnf9 34
  • 85 (a)
(Monodelphis domestica)
Mammalia -- 34
  • 74 (a)
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 63 (a)
(Gallus gallus)
Aves -- 34
  • 64 (a)
(Anolis carolinensis)
Reptilia -- 34
  • 61 (a)
(Danio rerio)
Actinopterygii c1qtnf9 33 34
  • 58.82 (n)
Species where no ortholog for C1QTNF9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for C1QTNF9 Gene

Gene Tree for C1QTNF9 (if available)
Gene Tree for C1QTNF9 (if available)

Paralogs for C1QTNF9 Gene

genes like me logo Genes that share paralogs with C1QTNF9: view

Variants for C1QTNF9 Gene

Sequence variations from dbSNP and Humsavar for C1QTNF9 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000172613 -- 24,315,095(+) T/C intron_variant
rs1000204061 -- 24,317,413(+) T/C intron_variant
rs1000271817 -- 24,310,386(+) C/T intron_variant
rs1000304659 -- 24,320,394(+) A/ intron_variant
rs1000627158 -- 24,311,554(+) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C1QTNF9 Gene

Variant ID Type Subtype PubMed ID
dgv1615n100 CNV gain 25217958
dgv3084n54 CNV gain 21841781
esv2422202 CNV duplication 17116639
esv2422502 CNV duplication 17116639
esv2751136 CNV loss 17911159
esv2751137 CNV gain 17911159
esv2761200 CNV gain+loss 21179565
esv3580576 CNV loss 25503493
esv3582215 CNV gain 25503493
esv3631540 CNV gain 21293372
esv3892310 CNV gain 25118596
esv3892311 CNV gain 25118596
esv5325 OTHER complex 18987735
nsv1044867 CNV gain 25217958
nsv1078303 OTHER inversion 25765185
nsv1140246 OTHER inversion 24896259
nsv1151909 OTHER inversion 26484159
nsv455837 CNV gain 19166990
nsv455842 CNV gain 19166990
nsv525965 CNV gain 19592680
nsv561292 CNV loss 21841781
nsv561342 CNV gain 21841781
nsv832567 CNV loss 17160897
nsv983562 CNV duplication 23825009

Variation tolerance for C1QTNF9 Gene

Residual Variation Intolerance Score: 94.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.90; 89.76% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C1QTNF9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1QTNF9 Gene

Disorders for C1QTNF9 Gene

Additional Disease Information for C1QTNF9

No disorders were found for C1QTNF9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1QTNF9 Gene

Publications for C1QTNF9 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark HF … Gray A (Genome research 2003) 2 3 4 58
  2. Identification and characterization of CTRP9, a novel secreted glycoprotein, from adipose tissue that reduces serum glucose in mice and forms heterotrimers with adiponectin. (PMID: 18787108) Wong GW … Lodish HF (FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2009) 2 3 58
  3. CTRP8 and CTRP9B are novel proteins that hetero-oligomerize with C1q/TNF family members. (PMID: 19666007) Peterson JM … Wong GW (Biochemical and biophysical research communications 2009) 3 4 58
  4. C1q-TNF-Related Protein-9 Promotes Cardiac Hypertrophy and Failure. (PMID: 27821723) Appari M … Heineke J (Circulation research 2017) 3 58
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58

Products for C1QTNF9 Gene

Sources for C1QTNF9 Gene

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