Aliases for C1QTNF7-AS1 Gene

Data sources for C1QTNF7-AS1 Gene:

RNA type for C1QTNF7-AS1 Gene

lncRNA

Aliases for C1QTNF7-AS1 Gene

External Ids for C1QTNF7-AS1 Gene

Summaries for C1QTNF7-AS1 Gene

GeneCards Summary for C1QTNF7-AS1 Gene

C1QTNF7-AS1 (C1QTNF7 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for C1QTNF7-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C1QTNF7-AS1 Gene

Genomics for C1QTNF7-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for C1QTNF7-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J015426 Enhancer 0.7 Ensembl ENCODE dbSUPER 250.7 -0.2 -151 2.3 ATF2 ATF7 CEBPB C1QTNF7-AS1 C1QTNF7 LOC107986185 CC2D2A HSALNG0033040
GH04J015456 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 18.2 -28.7 -28687 3.2 ZNF654 ATF3 YY1 CTCF CEBPB REST TRIM22 FOXA2 RXRA RAD21 C1QTNF7-AS1 C1QTNF7 ENSG00000251379 CD38 piR-37895-110 CC2D2A HSALNG0033040
GH04J015339 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.4 +87.0 87037 2.6 NFIA GATA2 CEBPB C1QTNF7 CC2D2A C1QTNF7-AS1 lnc-CC2D2A-1 HSALNG0033040
GH04J015374 Promoter/Enhancer 0.7 Ensembl ENCODE dbSUPER 18.3 +53.2 53201 1.4 C1QTNF7-AS1 C1QTNF7 ENSG00000251379 lnc-CC2D2A-1 CC2D2A HSALNG0033040
GH04J015450 Enhancer 0.7 Ensembl ENCODE 18.2 -23.7 -23686 3.2 CEBPB TCF7L2 SPI1 JUND POLR2A EP300 FOS C1QTNF7 C1QTNF7-AS1 ENSG00000251379 piR-37895-110 CC2D2A HSALNG0033040
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C1QTNF7-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for C1QTNF7-AS1 Gene

Latest Assembly
chr4:15,004,844-15,427,914
(GRCh38/hg38)
Size:
423,071 bases
Orientation:
Minus strand

Previous Assembly
chr4:15,006,566-15,429,538
(GRCh37/hg19 by Entrez Gene)
Size:
422,973 bases
Orientation:
Minus strand

chr4:15,006,566-15,429,538
(GRCh37/hg19 by Ensembl)
Size:
422,973 bases
Orientation:
Minus strand

Alternative Locations (GRCh38/hg38)

  • chr4(PATCHES):76,836-89,781 (-)

Genomic View for C1QTNF7-AS1 Gene

Genes around C1QTNF7-AS1 on UCSC Golden Path with GeneCards custom track
C1QTNF7-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
C1QTNF7-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1QTNF7-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1QTNF7-AS1 Gene

Proteins for C1QTNF7-AS1 Gene

Post-translational modifications for C1QTNF7-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1QTNF7-AS1 Gene

Domains & Families for C1QTNF7-AS1 Gene

Gene Families for C1QTNF7-AS1 Gene

genes like me logo Genes that share domains with C1QTNF7-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C1QTNF7-AS1 Gene

Function for C1QTNF7-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1QTNF7-AS1 Gene

Localization for C1QTNF7-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C1QTNF7-AS1 Gene

Pathways & Interactions for C1QTNF7-AS1 Gene

PathCards logo

SuperPathways for C1QTNF7-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C1QTNF7-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C1QTNF7-AS1 Gene

Drugs & Compounds for C1QTNF7-AS1 Gene

No Compound Related Data Available

Transcripts for C1QTNF7-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for C1QTNF7-AS1 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000057DECD_9606 lncRNA 636 4

RefSeq: NR_125911,

Ensembl: ENST00000502344 (view in UCSC) ,

LNCipedia: lnc-FBXL5-2:1,

NONCODE: NONHSAT095614.2,

URS00002DE907_9606 lncRNA 537 3

Ensembl: ENST00000513384 (view in UCSC) ,

LNCipedia: lnc-FBXL5-2:2,

NONCODE: NONHSAT095615.2,

URS0001BDA40D_9606 lncRNA 3516 1

LncBook: HSALNT0069488,

URS0001BDC33E_9606 lncRNA 2327 1

LncBook: HSALNT0069493,

URS0001BF8FE7_9606 lncRNA 2035 1

LncBook: HSALNT0069492,

C1QTNF7-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for C1QTNF7-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for C1QTNF7-AS1 Gene

No ASD Table

Relevant External Links for C1QTNF7-AS1 Gene

GeneLoc Exon Structure for
C1QTNF7-AS1

Expression for C1QTNF7-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1QTNF7-AS1 Gene

Orthologs for C1QTNF7-AS1 Gene

Evolution for C1QTNF7-AS1 Gene

ENSEMBL:
Gene Tree for C1QTNF7-AS1 (if available)
TreeFam:
Gene Tree for C1QTNF7-AS1 (if available)
Alliance of Genome Resources:
Additional Orthologs for C1QTNF7-AS1

No data available for Orthologs for C1QTNF7-AS1 Gene

Paralogs for C1QTNF7-AS1 Gene

No data available for Paralogs for C1QTNF7-AS1 Gene

Variants for C1QTNF7-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for C1QTNF7-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for C1QTNF7-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1464e212 CNV loss 25503493
dgv819e201 CNV deletion 23290073
dgv8976n54 CNV gain+loss 21841781
dgv8978n54 CNV loss 21841781
esv1320326 CNV deletion 17803354
esv2321959 CNV deletion 18987734
esv2437263 CNV deletion 19546169
esv25054 CNV gain 19812545
esv2623009 CNV insertion 19546169
esv2678006 CNV deletion 23128226
esv2727213 CNV deletion 23290073
esv2727214 CNV deletion 23290073
esv2727216 CNV deletion 23290073
esv2727218 CNV deletion 23290073
esv2727219 CNV deletion 23290073
esv2727220 CNV deletion 23290073
esv29275 CNV loss 19812545
esv3441568 CNV duplication 20981092
esv3563459 CNV deletion 23714750
esv3563464 CNV deletion 23714750
esv3599735 CNV loss 21293372
esv3599737 CNV loss 21293372
nsv1014533 CNV gain 25217958
nsv1074695 CNV deletion 25765185
nsv1123754 CNV deletion 24896259
nsv1147222 CNV deletion 26484159
nsv290191 CNV deletion 16902084
nsv290793 CNV deletion 16902084
nsv461280 CNV loss 19166990
nsv473047 CNV novel sequence insertion 20440878
nsv507151 OTHER sequence alteration 20534489
nsv507152 OTHER sequence alteration 20534489
nsv510888 OTHER complex 20534489
nsv517324 CNV loss 19592680
nsv518019 CNV loss 19592680
nsv518661 CNV loss 19592680
nsv593757 CNV loss 21841781
nsv593760 CNV gain 21841781
nsv829868 CNV gain 17160897
nsv954419 CNV deletion 24416366

Additional Variant Information for C1QTNF7-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1QTNF7-AS1
Leiden Open Variation Database (LOVD)
C1QTNF7-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for C1QTNF7-AS1 Gene

Disorders for C1QTNF7-AS1 Gene

Additional Disease Information for C1QTNF7-AS1

Open Targets Platform
Open Targets Platform

No disorders were found for C1QTNF7-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1QTNF7-AS1 Gene

Publications for C1QTNF7-AS1 Gene

No publications were found for C1QTNF7-AS1 Gene.

No data available for Mastermind for C1QTNF7-AS1 Gene

Products for C1QTNF7-AS1 Gene

Sources for C1QTNF7-AS1 Gene