Aliases for C1QTNF1-AS1 Gene

Subcategory (RNA class) for C1QTNF1-AS1 Gene

lncRNA

Quality Score for this RNA gene is

14

Aliases for C1QTNF1-AS1 Gene

  • C1QTNF1 Antisense RNA 1 2 3 5
  • C1QTNF1-AS1 2 170
  • HSALNG0119089 169

External Ids for C1QTNF1-AS1 Gene

Previous GeneCards Identifiers for C1QTNF1-AS1 Gene

  • GC17M077037
  • GC17M077048
  • GC17M079025
  • GC17M079036
  • GC17M079132
  • GC17M079145
  • GC17M079046
  • GC17M079056
  • GC17M079068
  • GC17M079077
  • GC17M079086
  • GC17M079101
  • GC17M079114
  • GC17M079125

Summaries for C1QTNF1-AS1 Gene

GeneCards Summary for C1QTNF1-AS1 Gene

C1QTNF1-AS1 (C1QTNF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for C1QTNF1-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C1QTNF1-AS1 Gene

Genomics for C1QTNF1-AS1 Gene

GeneHancer (GH) Regulatory Elements for C1QTNF1-AS1 Gene

Promoters and enhancers for C1QTNF1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J078438 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 5.8 +585.3 585272 8 CTCF ZNF362 MYC CC2D1A MAX ZNF121 RAD21 SP1 TRIM24 REST SOCS3 PGS1 DNAH17 ENSG00000200063 RNU6-638P C1QTNF1-AS1 CYTH1 USP36 TMEM235 TMC6
GH17J079022 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.6 +2.2 2154 6.5 CTCF LCORL MLX RBPJ POLR2A NR2F6 CREB1 MIXL1 NFYC HLF C1QTNF1 lnc-ENGASE-2 ENGASE CANT1 C1QTNF1-AS1
GH17J079033 Promoter/Enhancer 1.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -8.8 -8828 9 POLR2A USF2 RELA HLF ZNF121 ZIC2 CEBPA ZBTB8A CEBPB JUN C1QTNF1 CANT1 ENGASE BIRC5 CYTH1 USP36 C1QTNF1-AS1 HSALNG0119091
GH17J079019 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +7.4 7359 1.9 ZNF24 CTCF RAD21 SP7 PRDM1 ZIC2 REST PRDM10 ZEB2 SP1 C1QTNF1 C1QTNF1-AS1 CANT1
GH17J079029 Enhancer 0.7 Ensembl dbSUPER 0.6 -2.3 -2327 0.8 ZIC2 ZNF512 ZSCAN4 SCRT2 SCRT1 ZFHX2 ZNF366 ZNF664 ZNF624 C1QTNF1-AS1 C1QTNF1 HSALNG0119091
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C1QTNF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C1QTNF1-AS1 Gene

Genomic Locations for C1QTNF1-AS1 Gene
chr17:79,018,131-79,027,673
(GRCh38/hg38)
Size:
9,543 bases
Orientation:
Minus strand
chr17:77,015,291-77,023,737
(GRCh37/hg19)
Size:
8,447 bases
Orientation:
Minus strand

Genomic View for C1QTNF1-AS1 Gene

Genes around C1QTNF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1QTNF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1QTNF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1QTNF1-AS1 Gene

Proteins for C1QTNF1-AS1 Gene

Post-translational modifications for C1QTNF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1QTNF1-AS1 Gene

Domains & Families for C1QTNF1-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C1QTNF1-AS1 Gene

Function for C1QTNF1-AS1 Gene

Phenotypes From GWAS Catalog for C1QTNF1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1QTNF1-AS1 Gene

Localization for C1QTNF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C1QTNF1-AS1 Gene

Pathways & Interactions for C1QTNF1-AS1 Gene

PathCards logo

SuperPathways for C1QTNF1-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C1QTNF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1QTNF1-AS1 Gene

Drugs & Compounds for C1QTNF1-AS1 Gene

No Compound Related Data Available

Transcripts for C1QTNF1-AS1 Gene

mRNA/cDNA for C1QTNF1-AS1 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(4) LNCipedia transcripts :
(4) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for C1QTNF1-AS1 Gene

No ASD Table

Relevant External Links for C1QTNF1-AS1 Gene

GeneLoc Exon Structure for
C1QTNF1-AS1
ECgene alternative splicing isoforms for
C1QTNF1-AS1

Expression for C1QTNF1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1QTNF1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C1QTNF1-AS1 Gene

This gene is overexpressed in Adrenal Gland (x22.9), Spleen (x9.1), Heart - Atrial Appendage (x6.2), and Heart - Left Ventricle (x4.0).
genes like me logo Genes that share expression patterns with C1QTNF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1QTNF1-AS1 Gene

Orthologs for C1QTNF1-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C1QTNF1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1QTNF1-AS1 33
  • 100 (a)
OneToOne
Species where no ortholog for C1QTNF1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1QTNF1-AS1 Gene

ENSEMBL:
Gene Tree for C1QTNF1-AS1 (if available)
TreeFam:
Gene Tree for C1QTNF1-AS1 (if available)

Paralogs for C1QTNF1-AS1 Gene

No data available for Paralogs for C1QTNF1-AS1 Gene

Variants for C1QTNF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for C1QTNF1-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000052875 -- 79,029,233(-) C/T upstream_transcript_variant
rs1000518387 -- 79,028,027(-) C/T upstream_transcript_variant
rs1000565054 -- 79,019,923(-) A/G intron_variant
rs1001084750 -- 79,025,501(-) A/G intron_variant
rs1001185582 -- 79,024,598(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C1QTNF1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1057193 CNV gain 25217958
nsv470610 CNV loss 18288195
nsv523650 CNV loss 19592680

Variation tolerance for C1QTNF1-AS1 Gene

Gene Damage Index Score: 0.12; 2.69% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C1QTNF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1QTNF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1QTNF1-AS1 Gene

Disorders for C1QTNF1-AS1 Gene

Additional Disease Information for C1QTNF1-AS1

No disorders were found for C1QTNF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1QTNF1-AS1 Gene

Publications for C1QTNF1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

Products for C1QTNF1-AS1 Gene

Sources for C1QTNF1-AS1 Gene