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Aliases for C1QTNF1-AS1 Gene

Subcategory (RNA class) for C1QTNF1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for C1QTNF1-AS1 Gene

  • C1QTNF1 Antisense RNA 1 2 3 5

External Ids for C1QTNF1-AS1 Gene

Previous GeneCards Identifiers for C1QTNF1-AS1 Gene

  • GC17M077037
  • GC17M077048
  • GC17M079025
  • GC17M079036
  • GC17M079046
  • GC17M079056
  • GC17M079068
  • GC17M079077
  • GC17M079086

Summaries for C1QTNF1-AS1 Gene

GeneCards Summary for C1QTNF1-AS1 Gene

C1QTNF1-AS1 (C1QTNF1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for C1QTNF1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1QTNF1-AS1 Gene

Genomics for C1QTNF1-AS1 Gene

GeneHancer (GH) Regulatory Elements for C1QTNF1-AS1 Gene

Promoters and enhancers for C1QTNF1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I079029 Enhancer 0.6 dbSUPER 550.8 -1.9 -1934 1.2 SCRT1 CTCF ZBTB6 ZSCAN4 ZIC2 ZNF664 ZFHX2 SCRT2 BCL6B EGR2 C1QTNF1-AS1 C1QTNF1 ENGASE
GH17I078441 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 5.8 +584.8 584807 2.4 MAX BRCA1 ZNF121 POLR2A FOS CREM CHD2 TCF7L2 STAT1 CEBPB PGS1 DNAH17 SOCS3 RNU6-638P C1QTNF1-AS1 CYTH1 USP36 TMC6 GC17M078388 DNAH17-AS1
GH17I079022 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.8 +2.1 2136 6.5 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 FOS KLF13 PAF1 C1QTNF1 ENGASE CANT1 C1QTNF1-AS1
GH17I079036 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -10.3 -10253 3.7 JUN MAX SIN3A CEBPG RELA ZNF121 POLR2A RCOR1 FOSL2 FOS C1QTNF1 ENGASE CANT1 BIRC5 CYTH1 USP36 C1QTNF1-AS1
GH17I079019 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +7.3 7341 1.9 KLF17 FEZF1 RAD21 ZNF335 ZNF366 ZSCAN5C RCOR1 ZNF391 PAF1 ZNF654 C1QTNF1 C1QTNF1-AS1 CANT1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C1QTNF1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C1QTNF1-AS1 Gene

Genomic Locations for C1QTNF1-AS1 Gene
chr17:79,019,209-79,027,655
(GRCh38/hg38)
Size:
8,447 bases
Orientation:
Minus strand
chr17:77,015,291-77,023,737
(GRCh37/hg19)

Genomic View for C1QTNF1-AS1 Gene

Genes around C1QTNF1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1QTNF1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1QTNF1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1QTNF1-AS1 Gene

Proteins for C1QTNF1-AS1 Gene

Post-translational modifications for C1QTNF1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1QTNF1-AS1 Gene

Domains & Families for C1QTNF1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1QTNF1-AS1 Gene

Function for C1QTNF1-AS1 Gene

Phenotypes From GWAS Catalog for C1QTNF1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1QTNF1-AS1 Gene

Localization for C1QTNF1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C1QTNF1-AS1 Gene

Pathways & Interactions for C1QTNF1-AS1 Gene

SuperPathways for C1QTNF1-AS1 Gene

No Data Available

Interacting Proteins for C1QTNF1-AS1 Gene

Gene Ontology (GO) - Biological Process for C1QTNF1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1QTNF1-AS1 Gene

Drugs & Compounds for C1QTNF1-AS1 Gene

No Compound Related Data Available

Transcripts for C1QTNF1-AS1 Gene

mRNA/cDNA for C1QTNF1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C1QTNF1-AS1 Gene

No ASD Table

Relevant External Links for C1QTNF1-AS1 Gene

GeneLoc Exon Structure for
C1QTNF1-AS1
ECgene alternative splicing isoforms for
C1QTNF1-AS1

Expression for C1QTNF1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1QTNF1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for C1QTNF1-AS1 Gene

This gene is overexpressed in Adrenal Gland (x22.9), Spleen (x9.1), Heart - Atrial Appendage (x6.2), and Heart - Left Ventricle (x4.0).
genes like me logo Genes that share expression patterns with C1QTNF1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1QTNF1-AS1 Gene

Orthologs for C1QTNF1-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C1QTNF1-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1QTNF1-AS1 34
  • 100 (a)
OneToOne
Species where no ortholog for C1QTNF1-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C1QTNF1-AS1 Gene

ENSEMBL:
Gene Tree for C1QTNF1-AS1 (if available)
TreeFam:
Gene Tree for C1QTNF1-AS1 (if available)

Paralogs for C1QTNF1-AS1 Gene

No data available for Paralogs for C1QTNF1-AS1 Gene

Variants for C1QTNF1-AS1 Gene

Sequence variations from dbSNP and Humsavar for C1QTNF1-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000052875 -- 79,029,233(-) C/T upstream_transcript_variant
rs1000518387 -- 79,028,027(-) C/T upstream_transcript_variant
rs1000565054 -- 79,019,923(-) A/G intron_variant
rs1001084750 -- 79,025,501(-) A/G intron_variant
rs1001185582 -- 79,024,598(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for C1QTNF1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1057193 CNV gain 25217958
nsv470610 CNV loss 18288195
nsv523650 CNV loss 19592680

Variation tolerance for C1QTNF1-AS1 Gene

Gene Damage Index Score: 0.12; 2.69% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C1QTNF1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1QTNF1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C1QTNF1-AS1 Gene

Disorders for C1QTNF1-AS1 Gene

Additional Disease Information for C1QTNF1-AS1

No disorders were found for C1QTNF1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1QTNF1-AS1 Gene

Publications for C1QTNF1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for C1QTNF1-AS1 Gene

Sources for C1QTNF1-AS1 Gene

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