Aliases for C1QL1 Gene

Aliases for C1QL1 Gene

  • Complement C1q Like 1 2 3 5
  • CTRP14 2 3 4
  • C1QRF 2 3 4
  • CRF 2 3 4
  • C1q And Tumor Necrosis Factor-Related Protein 14 3 4
  • Complement Component 1, Q Subcomponent-Like 1 2 3
  • C1q/TNF-Related Protein 14 3 4
  • C1q-Related Factor 3 4
  • C1QTNF14 2 3
  • Complement Component 1 Q Subcomponent-Like 1 4
  • C1QL1 5

External Ids for C1QL1 Gene

Previous GeneCards Identifiers for C1QL1 Gene

  • GC17M043513
  • GC17M040392
  • GC17M043037
  • GC17M038803

Summaries for C1QL1 Gene

GeneCards Summary for C1QL1 Gene

C1QL1 (Complement C1q Like 1) is a Protein Coding gene. An important paralog of this gene is C1QL3.

UniProtKB/Swiss-Prot Summary for C1QL1 Gene

  • May regulate the number of excitatory synapses that are formed on hippocampus neurons. Has no effect on inhibitory synapses (By similarity).

Gene Wiki entry for C1QL1 Gene

No data available for Entrez Gene Summary , CIViC Summary , Tocris Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C1QL1 Gene

Genomics for C1QL1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for C1QL1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C1QL1 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for C1QL1

Top Transcription factor binding sites by QIAGEN in the C1QL1 gene promoter:
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • Oct-B1
  • oct-B2
  • oct-B3
  • POU6F1 (c2)

Genomic Locations for C1QL1 Gene

Latest Assembly
8,611 bases
Minus strand

Previous Assembly
(GRCh37/hg19 by Entrez Gene)
8,611 bases
Minus strand

(GRCh37/hg19 by Ensembl)
8,379 bases
Minus strand

Genomic View for C1QL1 Gene

Genes around C1QL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1QL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1QL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1QL1 Gene

Proteins for C1QL1 Gene

  • Protein details for C1QL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    C1q-related factor
    Protein Accession:

    Protein attributes for C1QL1 Gene

    258 amino acids
    Molecular mass:
    26453 Da
    Quaternary structure:
    • Interacts with ADGRB3. Forms heterooligomers with C1QL4, when proteins are coexpressed; this interaction does not occur after secretion.

neXtProt entry for C1QL1 Gene

Post-translational modifications for C1QL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C1QL1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for C1QL1 Gene

Domains & Families for C1QL1 Gene

Gene Families for C1QL1 Gene

Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted secreted proteins

Protein Domains for C1QL1 Gene

  • Collagen triple helix repeat
  • Complement C1q protein

Suggested Antigen Peptide Sequences for C1QL1 Gene

GenScript: Design optimal peptide antigens:
  • Complement component 1 Q subcomponent-like 1 (C1QRF_HUMAN)
genes like me logo Genes that share domains with C1QL1: view

No data available for Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C1QL1 Gene

Function for C1QL1 Gene

Molecular function for C1QL1 Gene

UniProtKB/Swiss-Prot Function:
May regulate the number of excitatory synapses that are formed on hippocampus neurons. Has no effect on inhibitory synapses (By similarity).

Phenotypes From GWAS Catalog for C1QL1 Gene

Gene Ontology (GO) - Molecular Function for C1QL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005102 signaling receptor binding IEA --
GO:0005515 protein binding IPI 19666007
genes like me logo Genes that share ontologies with C1QL1: view
genes like me logo Genes that share phenotypes with C1QL1: view

Animal Models for C1QL1 Gene

MGI Knock Outs for C1QL1:

Animal Models for research

  • Taconic Biosciences Mouse Models for C1QL1

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C1QL1

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for C1QL1 Gene

Localization for C1QL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C1QL1 Gene


Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C1QL1 gene
Compartment Confidence
extracellular 5
plasma membrane 1
cytoskeleton 1
nucleus 1

Gene Ontology (GO) - Cellular Components for C1QL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005576 extracellular region IEA --
GO:0005581 collagen trimer IEA --
GO:0005737 cytoplasm IEA --
GO:0043083 synaptic cleft IEA --
genes like me logo Genes that share ontologies with C1QL1: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for C1QL1 Gene

Pathways & Interactions for C1QL1 Gene

PathCards logo

SuperPathways for C1QL1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C1QL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007626 locomotory behavior NAS 9878755
GO:0016322 neuron remodeling IEA --
GO:0061743 motor learning IEA --
GO:0099558 maintenance of synapse structure IEA --
genes like me logo Genes that share ontologies with C1QL1: view

No data available for Pathways by source and SIGNOR curated interactions for C1QL1 Gene

Drugs & Compounds for C1QL1 Gene

No Compound Related Data Available

Transcripts for C1QL1 Gene

mRNA/cDNA for C1QL1 Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C1QL1

Alternative Splicing Database (ASD) splice patterns (SP) for C1QL1 Gene

No ASD Table

Relevant External Links for C1QL1 Gene

GeneLoc Exon Structure for

Expression for C1QL1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C1QL1 Gene

mRNA differential expression in normal tissues according to GTEx for C1QL1 Gene

This gene is overexpressed in Brain - Amygdala (x4.3).

Protein differential expression in normal tissues from HIPED for C1QL1 Gene

This gene is overexpressed in Retina (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C1QL1 Gene

Protein tissue co-expression partners for C1QL1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C1QL1

SOURCE GeneReport for Unigene cluster for C1QL1 Gene:


mRNA Expression by UniProt/SwissProt for C1QL1 Gene:

Tissue specificity: Expressed in brainstem.

Evidence on tissue expression from TISSUES for C1QL1 Gene

  • Nervous system(3.3)
  • Pancreas(2.4)
genes like me logo Genes that share expression patterns with C1QL1: view

Primer products for research

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for C1QL1 Gene

Orthologs for C1QL1 Gene

This gene was present in the common ancestor of animals.

Orthologs for C1QL1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C1QL1 29 30
  • 99.73 (n)
(Canis familiaris)
Mammalia C1QL1 29 30
  • 94.57 (n)
(Monodelphis domestica)
Mammalia C1QL1 30
  • 94 (a)
(Mus musculus)
Mammalia C1ql1 29 16 30
  • 93.41 (n)
(Bos Taurus)
Mammalia C1QL1 29 30
  • 93.28 (n)
(Rattus norvegicus)
Mammalia C1ql1 29
  • 92.77 (n)
(Ornithorhynchus anatinus)
Mammalia -- 30
  • 8 (a)
(Gallus gallus)
Aves C1QL1 30
  • 87 (a)
C1QL4 29
  • 82.47 (n)
Tropical Clawed Frog
(Silurana tropicalis)
Amphibia c1ql1 29
  • 73.22 (n)
(Danio rerio)
Actinopterygii LOC556064 29
  • 71.91 (n)
c1ql3b 30
  • 67 (a)
C1QL1 (2 of 2) 30
  • 64 (a)
Dr.16893 29
Fruit Fly
(Drosophila melanogaster)
Insecta Capr 30
  • 5 (a)
Species where no ortholog for C1QL1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for C1QL1 Gene

Gene Tree for C1QL1 (if available)
Gene Tree for C1QL1 (if available)
Evolutionary constrained regions (ECRs) for C1QL1: view image
Alliance of Genome Resources:
Additional Orthologs for C1QL1

Paralogs for C1QL1 Gene

(8) SIMAP similar genes for C1QL1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with C1QL1: view

Variants for C1QL1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for C1QL1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for C1QL1 Gene

Variant ID Type Subtype PubMed ID
nsv1070405 CNV deletion 25765185
nsv1126459 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv527788 CNV loss 19592680
nsv575101 CNV loss 21841781
nsv575102 CNV gain 21841781
nsv833457 CNV loss 17160897
nsv953902 CNV deletion 24416366

Variation tolerance for C1QL1 Gene

Residual Variation Intolerance Score: 53.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.50; 10.88% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C1QL1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
Leiden Open Variation Database (LOVD)

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for C1QL1 Gene

Disorders for C1QL1 Gene

Additional Disease Information for C1QL1

Human Genome Epidemiology Navigator
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
Open Targets Platform

No disorders were found for C1QL1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C1QL1 Gene

Publications for C1QL1 Gene

  1. Cloning and characterization of CRF, a novel C1q-related factor, expressed in areas of the brain involved in motor function. (PMID: 9878755) Bérubé NG … Pereira-Smith OM (Brain research. Molecular brain research 1999) 2 3 4 22
  2. CTRP8 and CTRP9B are novel proteins that hetero-oligomerize with C1q/TNF family members. (PMID: 19666007) Peterson JM … Wong GW (Biochemical and biophysical research communications 2009) 3 22
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4
  4. CRABP1, C1QL1 and LCN2 are biomarkers of differentiated thyroid carcinoma, and predict extrathyroidal extension. (PMID: 29321030) Celestino R … Soares P (BMC cancer 2018) 3
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3

Products for C1QL1 Gene

  • Biorbyt antibodies for C1QL1

Sources for C1QL1 Gene