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C1GALT1P2 Gene(Pseudogene)

Core 1 Synthase, Glycoprotein-N-Acetylgalactosamine 3-Beta-Galactosyltransferase 1 Pseudogene 2

GCID:
GC05P056192
GIFtS:
9

Aliases for C1GALT1P2 Gene

Aliases for C1GALT1P2 Gene

  • Core 1 Synthase, Glycoprotein-N-Acetylgalactosamine 3-Beta-Galactosyltransferase 1 Pseudogene 2 2 3 5
  • Ore 1 Synthase, Glycoprotein-N-Acetylgalactosamine 3-Beta-Galactosyltransferase 1 Pseudogene 2 2

External Ids for C1GALT1P2 Gene

Summaries for C1GALT1P2 Gene

GeneCards Summary for C1GALT1P2 Gene

C1GALT1P2 (Core 1 Synthase, Glycoprotein-N-Acetylgalactosamine 3-Beta-Galactosyltransferase 1 Pseudogene 2) is a Pseudogene.

Additional gene information for C1GALT1P2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1GALT1P2 Gene

Genomics for C1GALT1P2 Gene

GeneHancer (GH) Regulatory Elements for C1GALT1P2 Gene

Promoters and enhancers for C1GALT1P2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I056191 Enhancer 0.6 ENCODE dbSUPER 550.8 -0.5 -499 0.2 IKZF1 IKZF2 GC05P056193 C1GALT1P2 RNU6-299P ENSG00000238326 ANKRD55 RNA5SP184
GH05I056190 Enhancer 0.5 Ensembl dbSUPER 550.8 -1.7 -1667 0.2 JUN C1GALT1P2 GC05P056193 RNU6-299P ENSG00000238326 RNA5SP184 ANKRD55
GH05I056174 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -16.0 -16006 3.1 ATF1 JUN CEBPG RAD21 FOSL1 ZNF335 FOSL2 NFE2 FOS STAT1 ANKRD55 RNU6-299P ENSG00000238326 IL6ST C1GALT1P2 RNA5SP184
GH05I056161 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -30.4 -30385 0.9 ATF1 FOXA2 ARNT NCOA2 TCF12 ZNF766 GATA2 ATF7 NCOA1 MBD2 RNA5SP184 C1GALT1P2 ANKRD55
GH05I056167 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -23.0 -22974 3.7 HDAC1 MEIS2 PKNOX1 ZNF449 SREBF2 JUN CEBPG GATA3 ZNF316 POLR2A ENSG00000238326 RNU6-299P C1GALT1P2 RNA5SP184 ANKRD55
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C1GALT1P2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C1GALT1P2 Gene

Genomic Locations for C1GALT1P2 Gene
chr5:56,192,368-56,193,835
(GRCh38/hg38)
Size:
1,468 bases
Orientation:
Plus strand
chr5:55,488,357-55,489,462
(GRCh37/hg19)

Genomic View for C1GALT1P2 Gene

Genes around C1GALT1P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1GALT1P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1GALT1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1GALT1P2 Gene

Proteins for C1GALT1P2 Gene

Post-translational modifications for C1GALT1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1GALT1P2 Gene

Domains & Families for C1GALT1P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1GALT1P2 Gene

Function for C1GALT1P2 Gene

Phenotypes From GWAS Catalog for C1GALT1P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1GALT1P2 Gene

Localization for C1GALT1P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C1GALT1P2 Gene

Pathways & Interactions for C1GALT1P2 Gene

SuperPathways for C1GALT1P2 Gene

No Data Available

Interacting Proteins for C1GALT1P2 Gene

Gene Ontology (GO) - Biological Process for C1GALT1P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1GALT1P2 Gene

Drugs & Compounds for C1GALT1P2 Gene

No Compound Related Data Available

Transcripts for C1GALT1P2 Gene

mRNA/cDNA for C1GALT1P2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C1GALT1P2 Gene

No ASD Table

Relevant External Links for C1GALT1P2 Gene

GeneLoc Exon Structure for
C1GALT1P2
ECgene alternative splicing isoforms for
C1GALT1P2

Expression for C1GALT1P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1GALT1P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of C1GALT1P2 Gene:

C1GALT1P2
genes like me logo Genes that share expression patterns with C1GALT1P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1GALT1P2 Gene

Orthologs for C1GALT1P2 Gene

Evolution for C1GALT1P2 Gene

ENSEMBL:
Gene Tree for C1GALT1P2 (if available)
TreeFam:
Gene Tree for C1GALT1P2 (if available)

No data available for Orthologs for C1GALT1P2 Gene

Paralogs for C1GALT1P2 Gene

No data available for Paralogs for C1GALT1P2 Gene

Variants for C1GALT1P2 Gene

Additional Variant Information for C1GALT1P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1GALT1P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C1GALT1P2 Gene

Disorders for C1GALT1P2 Gene

No disorders were found for C1GALT1P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for C1GALT1P2 Gene

Publications for C1GALT1P2 Gene

No publications were found for C1GALT1P2 Gene.

Products for C1GALT1P2 Gene

Sources for C1GALT1P2 Gene

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