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C1GALT1P1 Gene(Pseudogene)

Core 1 Synthase, Glycoprotein-N-Acetylgalactosamine 3-Beta-Galactosyltransferase 1 Pseudogene 1

GCID:
GC12P069284
GIFtS:
9

Aliases for C1GALT1P1 Gene

Aliases for C1GALT1P1 Gene

  • Core 1 Synthase, Glycoprotein-N-Acetylgalactosamine 3-Beta-Galactosyltransferase 1 Pseudogene 1 2 3 5

External Ids for C1GALT1P1 Gene

Summaries for C1GALT1P1 Gene

GeneCards Summary for C1GALT1P1 Gene

C1GALT1P1 (Core 1 Synthase, Glycoprotein-N-Acetylgalactosamine 3-Beta-Galactosyltransferase 1 Pseudogene 1) is a Pseudogene.

Additional gene information for C1GALT1P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C1GALT1P1 Gene

Genomics for C1GALT1P1 Gene

GeneHancer (GH) Regulatory Elements for C1GALT1P1 Gene

Promoters and enhancers for C1GALT1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I069284 Promoter/Enhancer 1.3 Ensembl ENCODE 550.8 +0.1 83 0.6 HDAC1 ELF3 NFRKB ZBTB40 RAD21 YY1 ZNF335 ETV6 CREM ZNF362 GC12P069282 C1GALT1P1 LYZ GC12P069299
GH12I068803 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE 15.1 -477.5 -477515 7 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 MDM2 LOC100130075 NUP107 CPSF6 RPL10P12 RAP1B KRT8P39 C1GALT1P1 SLC35E3 CPM
GH12I068674 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.5 -608.2 -608153 2.3 HDAC1 HDGF PKNOX1 INSM2 NFXL1 ZNF2 ZNF335 ZNF366 SCRT2 FOS CPSF6 C1GALT1P1 MDM1 MDM2 NUP107 RAP1B SLC35E3 RPL7P42 LOC100507250 GC12P068661
GH12I069291 Enhancer 1 Ensembl ENCODE 0.4 +7.1 7101 0.6 ELF3 RB1 ARID4B SIN3A RAD21 RFX5 ARID2 SCRT2 ZNF143 RUNX3 LYZ GC12P069299 C1GALT1P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C1GALT1P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for C1GALT1P1 Gene

Genomic Locations for C1GALT1P1 Gene
chr12:69,284,217-69,285,684
(GRCh38/hg38)
Size:
1,468 bases
Orientation:
Plus strand
chr12:69,678,177-69,679,267
(GRCh37/hg19)

Genomic View for C1GALT1P1 Gene

Genes around C1GALT1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1GALT1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1GALT1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1GALT1P1 Gene

Proteins for C1GALT1P1 Gene

Post-translational modifications for C1GALT1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1GALT1P1 Gene

Domains & Families for C1GALT1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C1GALT1P1 Gene

Function for C1GALT1P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1GALT1P1 Gene

Localization for C1GALT1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C1GALT1P1 Gene

Pathways & Interactions for C1GALT1P1 Gene

SuperPathways for C1GALT1P1 Gene

No Data Available

Interacting Proteins for C1GALT1P1 Gene

Gene Ontology (GO) - Biological Process for C1GALT1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C1GALT1P1 Gene

Drugs & Compounds for C1GALT1P1 Gene

No Compound Related Data Available

Transcripts for C1GALT1P1 Gene

mRNA/cDNA for C1GALT1P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C1GALT1P1 Gene

No ASD Table

Relevant External Links for C1GALT1P1 Gene

GeneLoc Exon Structure for
C1GALT1P1
ECgene alternative splicing isoforms for
C1GALT1P1

Expression for C1GALT1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for C1GALT1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of C1GALT1P1 Gene:

C1GALT1P1
genes like me logo Genes that share expression patterns with C1GALT1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1GALT1P1 Gene

Orthologs for C1GALT1P1 Gene

Evolution for C1GALT1P1 Gene

ENSEMBL:
Gene Tree for C1GALT1P1 (if available)
TreeFam:
Gene Tree for C1GALT1P1 (if available)

No data available for Orthologs for C1GALT1P1 Gene

Paralogs for C1GALT1P1 Gene

No data available for Paralogs for C1GALT1P1 Gene

Variants for C1GALT1P1 Gene

Additional Variant Information for C1GALT1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1GALT1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C1GALT1P1 Gene

Disorders for C1GALT1P1 Gene

No disorders were found for C1GALT1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for C1GALT1P1 Gene

Publications for C1GALT1P1 Gene

No publications were found for C1GALT1P1 Gene.

Products for C1GALT1P1 Gene

Sources for C1GALT1P1 Gene

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