Aliases for C1GALT1P1 Gene

Aliases for C1GALT1P1 Gene

  • C1GALT1 Pseudogene 1 2 3 5
  • Core 1 Synthase, Glycoprotein-N-Acetylgalactosamine 3-Beta-Galactosyltransferase 1 Pseudogene 1 2 3
  • Core 1 Synthase, Glycoprotein-N-Acetylgalactosamine 3-Beta-Galactosyltransferase, 1 Pseudogene 3
  • C1GALT1P1 5

External Ids for C1GALT1P1 Gene

Summaries for C1GALT1P1 Gene

GeneCards Summary for C1GALT1P1 Gene

C1GALT1P1 (C1GALT1 Pseudogene 1) is a Pseudogene.

Additional gene information for C1GALT1P1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C1GALT1P1 Gene

Genomics for C1GALT1P1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for C1GALT1P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J069284 Promoter/Enhancer 1.1 Ensembl ENCODE 600.7 +0.1 84 1 CTCF ETV6 MTA2 REST ZNF24 HDAC1 GABPA SOX6 ZNF561 NRF1 C1GALT1P1 lnc-CPSF6-2 LYZ CPSF6 ENSG00000274979 ENSG00000257764
GH12J068674 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 11.5 -608.2 -608153 2.3 ZNF629 ZNF512 LEF1 IKZF1 JUND PRDM1 MTA2 PKNOX1 MTA1 PATZ1 CPSF6 C1GALT1P1 MDM1 MDM2 NUP107 RAP1B SLC35E3 RPL7P42 lnc-NUP107-1 LOC100507250
GH12J069001 Enhancer 0.7 Ensembl ENCODE 4.5 -284.1 -284117 5.4 FOXA1 CEBPB PKNOX1 JUND EP300 GATA3 SPI1 ZBTB7B FOS MAX C1GALT1P1 NUP107 piR-39341-089 lnc-MDM2-3 CPM CPSF6
GH12J069328 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +47.3 47292 6.1 GATAD2A ATF7 TFE3 SOX13 IKZF1 FOXA1 PRDM1 ZIC2 RBFOX2 RXRB ENSG00000274979 piR-30188-045 piR-60246-043 LYZ NUP107 YEATS4 CNOT2 CPSF6 KRT8P39 CPM
GH12J069291 Enhancer 1 Ensembl ENCODE 0.4 +8.2 8184 3.6 GATAD2A CTCF ZNF512 JUND ZNF143 RXRB REST RAD21 TRIM22 ZNF561 LYZ YEATS4 C1GALT1P1 ENSG00000274979 CPSF6 ENSG00000257764
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C1GALT1P1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for C1GALT1P1 Gene

Genomic Locations for C1GALT1P1 Gene
chr12:69,284,217-69,285,684
(GRCh38/hg38)
Size:
1,468 bases
Orientation:
Plus strand
chr12:69,678,177-69,679,267
(GRCh37/hg19)
Size:
1,091 bases
Orientation:
Plus strand

Genomic View for C1GALT1P1 Gene

Genes around C1GALT1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C1GALT1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C1GALT1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C1GALT1P1 Gene

Proteins for C1GALT1P1 Gene

Post-translational modifications for C1GALT1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for C1GALT1P1 Gene

Domains & Families for C1GALT1P1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C1GALT1P1 Gene

Function for C1GALT1P1 Gene

Phenotypes From GWAS Catalog for C1GALT1P1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C1GALT1P1 Gene

Localization for C1GALT1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C1GALT1P1 Gene

Pathways & Interactions for C1GALT1P1 Gene

PathCards logo

SuperPathways for C1GALT1P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C1GALT1P1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C1GALT1P1 Gene

Drugs & Compounds for C1GALT1P1 Gene

No Compound Related Data Available

Transcripts for C1GALT1P1 Gene

mRNA/cDNA for C1GALT1P1 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for C1GALT1P1 Gene

No ASD Table

Relevant External Links for C1GALT1P1 Gene

GeneLoc Exon Structure for
C1GALT1P1

Expression for C1GALT1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C1GALT1P1 Gene

genes like me logo Genes that share expression patterns with C1GALT1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C1GALT1P1 Gene

Orthologs for C1GALT1P1 Gene

Evolution for C1GALT1P1 Gene

ENSEMBL:
Gene Tree for C1GALT1P1 (if available)
TreeFam:
Gene Tree for C1GALT1P1 (if available)

No data available for Orthologs for C1GALT1P1 Gene

Paralogs for C1GALT1P1 Gene

No data available for Paralogs for C1GALT1P1 Gene

Variants for C1GALT1P1 Gene

Additional Variant Information for C1GALT1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C1GALT1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for C1GALT1P1 Gene

Disorders for C1GALT1P1 Gene

No disorders were found for C1GALT1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for C1GALT1P1 Gene

Publications for C1GALT1P1 Gene

No publications were found for C1GALT1P1 Gene.

No data available for Mastermind for C1GALT1P1 Gene

Products for C1GALT1P1 Gene

Sources for C1GALT1P1 Gene