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Aliases for C19orf54 Gene

Aliases for C19orf54 Gene

  • Chromosome 19 Open Reading Frame 54 2 3 5
  • UPF0692 Protein C19orf54 3

External Ids for C19orf54 Gene

Previous GeneCards Identifiers for C19orf54 Gene

  • GC19M045939
  • GC19M041246
  • GC19M037680

Summaries for C19orf54 Gene

GeneCards Summary for C19orf54 Gene

C19orf54 (Chromosome 19 Open Reading Frame 54) is a Protein Coding gene.

Additional gene information for C19orf54 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C19orf54 Gene

Genomics for C19orf54 Gene

GeneHancer (GH) Regulatory Elements for C19orf54 Gene

Promoters and enhancers for C19orf54 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J040747 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 664.1 -1.2 -1208 9.8 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 YY1 ZNF213 E2F8 ZNF416 SNRPA C19orf54 HNRNPUL1 ENSG00000269843 CCDC97 COQ8B ZNF780A AKT2 FBL ZNF780B
GH19J040776 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 12.2 -26.4 -26390 3.3 HDGF PKNOX1 FOXA2 SMAD1 ARNT ZFP64 ARID4B SIN3A ZNF2 IRF4 MIA RAB4B RAB4B-EGLN2 HNRNPUL1 SNRPA CCDC97 PSMC4 FBL C19orf54 CYP2F2P
GH19J040796 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.2 -50.8 -50784 11.8 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 ZNF213 ZNF416 ZNF143 SP3 EGLN2 ENSG00000268797 ZNF780B SNRPA HNRNPUL1 CCDC97 ENSG00000269843 NUMBL ZNF546 COQ8B
GH19J040662 Enhancer 1.3 Ensembl ENCODE 17.1 +87.8 87806 2.8 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 ZC3H11A PIR47829 SNRPA HNRNPUL1 FBL ENSG00000269843 AKT2 CCDC97 ZNF780A ITPKC RAB4B
GH19J040744 Enhancer 1 Ensembl ENCODE 20.8 +6.3 6301 2.3 PKNOX1 INSM2 MZF1 KLF14 RAD21 ZEB1 ZNF335 GLIS2 ZNF138 ATF7 ITPKC COQ8B SNRPA ENSG00000269843 C19orf54 HNRNPUL1 CCDC97 FBL RNU6-195P AKT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C19orf54 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the C19orf54 gene promoter:

Genomic Locations for C19orf54 Gene

Genomic Locations for C19orf54 Gene
chr19:40,740,856-40,751,553
(GRCh38/hg38)
Size:
10,698 bases
Orientation:
Minus strand
chr19:41,246,761-41,257,458
(GRCh37/hg19)

Genomic View for C19orf54 Gene

Genes around C19orf54 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C19orf54 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C19orf54 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf54 Gene

Proteins for C19orf54 Gene

  • Protein details for C19orf54 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5BKX5-CS054_HUMAN
    Recommended name:
    UPF0692 protein C19orf54
    Protein Accession:
    Q5BKX5
    Secondary Accessions:
    • A8MSZ5
    • B4DNU7

    Protein attributes for C19orf54 Gene

    Size:
    351 amino acids
    Molecular mass:
    37779 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C19orf54 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for C19orf54 Gene

Post-translational modifications for C19orf54 Gene

  • Ubiquitination at posLast=189189
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for C19orf54 Gene

Domains & Families for C19orf54 Gene

Gene Families for C19orf54 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C19orf54 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for C19orf54 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5BKX5

UniProtKB/Swiss-Prot:

CS054_HUMAN :
  • Belongs to the UPF0692 family.
Family:
  • Belongs to the UPF0692 family.
genes like me logo Genes that share domains with C19orf54: view

Function for C19orf54 Gene

Phenotypes From GWAS Catalog for C19orf54 Gene

genes like me logo Genes that share phenotypes with C19orf54: view

Animal Model Products

miRNA for C19orf54 Gene

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C19orf54 Gene

Localization for C19orf54 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C19orf54 gene
Compartment Confidence
golgi apparatus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C19orf54 Gene

Pathways & Interactions for C19orf54 Gene

SuperPathways for C19orf54 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C19orf54 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C19orf54 Gene

Drugs & Compounds for C19orf54 Gene

No Compound Related Data Available

Transcripts for C19orf54 Gene

Unigene Clusters for C19orf54 Gene

Chromosome 19 open reading frame 54:
Representative Sequences: