Aliases for C19orf47 Gene

Aliases for C19orf47 Gene

  • Chromosome 19 Open Reading Frame 47 2 3 5
  • Uncharacterized Protein C19orf47 3 4
  • C19orf47 5
  • FLJ36888 2

External Ids for C19orf47 Gene

Previous GeneCards Identifiers for C19orf47 Gene

  • GC19M045517
  • GC19M040826
  • GC19M037262
  • GC19M040319
  • GC19M040295

Summaries for C19orf47 Gene

GeneCards Summary for C19orf47 Gene

C19orf47 (Chromosome 19 Open Reading Frame 47) is a Protein Coding gene.

Additional gene information for C19orf47 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C19orf47 Gene

Genomics for C19orf47 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for C19orf47 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C19orf47 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for C19orf47

Top Transcription factor binding sites by QIAGEN in the C19orf47 gene promoter:
  • AREB6
  • c-Myc
  • CBF(2)
  • CBF-A
  • CBF-B
  • CP1A
  • CP2
  • Max1
  • Pax-5

Genomic Locations for C19orf47 Gene

Genomic Locations for C19orf47 Gene
55,785 bases
Minus strand
28,992 bases
Minus strand

Genomic View for C19orf47 Gene

Genes around C19orf47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C19orf47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C19orf47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C19orf47 Gene

Proteins for C19orf47 Gene

  • Protein details for C19orf47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C19orf47
    Protein Accession:
    Secondary Accessions:
    • Q8IZ33
    • Q8N0V9

    Protein attributes for C19orf47 Gene

    422 amino acids
    Molecular mass:
    44746 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for C19orf47 Gene


neXtProt entry for C19orf47 Gene

Post-translational modifications for C19orf47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for C19orf47 Gene

Domains & Families for C19orf47 Gene

Gene Families for C19orf47 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for C19orf47 Gene

genes like me logo Genes that share domains with C19orf47: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C19orf47 Gene

Function for C19orf47 Gene

Phenotypes From GWAS Catalog for C19orf47 Gene

Gene Ontology (GO) - Molecular Function for C19orf47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with C19orf47: view
genes like me logo Genes that share phenotypes with C19orf47: view

Animal Model Products

CRISPR Products

miRNA for C19orf47 Gene

miRTarBase miRNAs that target C19orf47

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C19orf47

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C19orf47 Gene

Localization for C19orf47 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C19orf47 gene
Compartment Confidence
nucleus 5
cytosol 0

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for C19orf47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with C19orf47: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for C19orf47 Gene

Pathways & Interactions for C19orf47 Gene

PathCards logo

SuperPathways for C19orf47 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C19orf47 Gene


No data available for Pathways by source and SIGNOR curated interactions for C19orf47 Gene

Drugs & Compounds for C19orf47 Gene

No Compound Related Data Available

Transcripts for C19orf47 Gene

mRNA/cDNA for C19orf47 Gene

8 NCBI additional mRNA sequence :
9 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C19orf47

Alternative Splicing Database (ASD) splice patterns (SP) for C19orf47 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b · 12c ^ 13a · 13b
SP1: - - - -
SP2: - -
SP3: -
SP4: - -
SP5: -
SP6: -

Relevant External Links for C19orf47 Gene

GeneLoc Exon Structure for

Expression for C19orf47 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C19orf47 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for C19orf47 Gene

This gene is overexpressed in Muscle - Skeletal (x8.8) and Heart - Left Ventricle (x5.1).

Protein differential expression in normal tissues from HIPED for C19orf47 Gene

This gene is overexpressed in Plasma (27.5), Testis (16.3), and Heart (9.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for C19orf47 Gene

Protein tissue co-expression partners for C19orf47 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C19orf47

SOURCE GeneReport for Unigene cluster for C19orf47 Gene:


Evidence on tissue expression from TISSUES for C19orf47 Gene

  • Nervous system(4.2)
  • Lung(4.1)
  • Muscle(2.1)
genes like me logo Genes that share expression patterns with C19orf47: view

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for C19orf47 Gene

Orthologs for C19orf47 Gene

This gene was present in the common ancestor of animals.

Orthologs for C19orf47 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C19H19orf47 30
  • 99.53 (n)
C19orf47 31
  • 99 (a)
(Canis familiaris)
Mammalia C19orf47 31
  • 93 (a)
C1H19orf47 30
  • 91.75 (n)
(Bos Taurus)
Mammalia C18H19orf47 30
  • 87.83 (n)
C19orf47 31
  • 86 (a)
(Rattus norvegicus)
Mammalia RGD1307554 30
  • 84.58 (n)
(Mus musculus)
Mammalia 2310022A10Rik 30 17 31
  • 83.83 (n)
(Ornithorhynchus anatinus)
Mammalia -- 31
  • 71 (a)
-- 31
  • 69 (a)
(Monodelphis domestica)
Mammalia C19orf47 31
  • 70 (a)
(Anolis carolinensis)
Reptilia C19orf47 31
  • 62 (a)
Tropical Clawed Frog
(Silurana tropicalis)
Amphibia c19orf47 30
  • 63.31 (n)
Str.1068 30
African clawed frog
(Xenopus laevis)
Amphibia Xl.6739 30
(Danio rerio)
Actinopterygii si:ch211-160d20.3 30
  • 61.38 (n)
C18H19orf47 31
  • 50 (a)
Fruit Fly
(Drosophila melanogaster)
Insecta CG16812 31
  • 22 (a)
(Caenorhabditis elegans)
Secernentea F53F8.5 31
  • 20 (a)
Sea Squirt
(Ciona savignyi)
Ascidiacea CSA.6676 31
  • 25 (a)
Species where no ortholog for C19orf47 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)

Evolution for C19orf47 Gene

Gene Tree for C19orf47 (if available)
Gene Tree for C19orf47 (if available)

Paralogs for C19orf47 Gene

(36) SIMAP similar genes for C19orf47 Gene using alignment to 6 proteins:

  • CS047_HUMAN
  • J3QS16_HUMAN
  • J3QS80_HUMAN
genes like me logo Genes that share paralogs with C19orf47: view

No data available for Paralogs for C19orf47 Gene

Variants for C19orf47 Gene

Additional dbSNP identifiers (rs#s) for C19orf47 Gene

Structural Variations from Database of Genomic Variants (DGV) for C19orf47 Gene

Variant ID Type Subtype PubMed ID
esv2758761 CNV gain 17122850
esv3644344 CNV gain 21293372
nsv833831 CNV loss 17160897

Variation tolerance for C19orf47 Gene

Residual Variation Intolerance Score: 18.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.20; 39.75% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C19orf47 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for C19orf47 Gene

Disorders for C19orf47 Gene

No disorders were found for C19orf47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C19orf47 Gene

Publications for C19orf47 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3
  3. A reference map of the human binary protein interactome. (PMID: 32296183) Luck K … Calderwood MA (Nature 2020) 3
  4. PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling. (PMID: 31091453) Shami Shah A … Baskin JM (Cell reports 2019) 3
  5. Quantitative mapping of RNA-mediated nuclear estrogen receptor β interactome in human breast cancer cells. (PMID: 29509190) Giurato G … Tarallo R (Scientific data 2018) 3

Products for C19orf47 Gene

Sources for C19orf47 Gene