Aliases for C17orf98 Gene
Aliases for C17orf98 Gene
External Ids for C17orf98 Gene
- HGNC: 34492
- Entrez Gene: 388381
- Ensembl: ENSG00000275489
- UniProtKB: A8MV24
Previous GeneCards Identifiers for C17orf98 Gene
- GC17M034245
- GC17M036991
- GC17M032786
- GC17M038835
- GC17M038834
- GC17M038836
- GC17M038837
- GC17M038838
- GC17M038839
- GC17M038840
- GC17M038845
Summaries for C17orf98 Gene
GeneCards Summary for C17orf98 Gene
C17orf98 (Chromosome 17 Open Reading Frame 98) is a Protein Coding gene.
Additional gene information for C17orf98 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C17orf98 Gene
Genomics for C17orf98 Gene
GeneHancer (GH) Regulatory Elements for C17orf98 Gene
Promoters and enhancers for C17orf98 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around C17orf98 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the C17orf98 gene promoter:
-
- CREB
- deltaCREB
- Nkx2-5
- GATA-1
- NF-kappaB
- NF-kappaB1
- N-Myc
- RelA
Regulatory Element Products
Genomic Locations for C17orf98 Gene
Genomic Locations for C17orf98 Gene
- chr17:38,825,392-38,841,500
- (GRCh38/hg38)
- Size:
- 16,109 bases
- Orientation:
- Minus strand
- chr17:36,991,341-36,997,708
- (GRCh37/hg19)
- Size:
- 6,368 bases
- Orientation:
- Minus strand
Genomic View for C17orf98 Gene
Genes around C17orf98 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q12 by Entrez Gene
- 17q12 by HGNC
- 17q12 by Ensembl
C17orf98 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for C17orf98 Gene
Proteins for C17orf98 Gene
-
Protein details for C17orf98 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- A8MV24-CQ098_HUMAN
- Recommended name:
- Uncharacterized protein C17orf98
- Protein Accession:
- A8MV24
Protein attributes for C17orf98 Gene
- Size:
- 154 amino acids
- Molecular mass:
- 17565 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for C17orf98 Gene
No Post-translational modifications
Other Protein References for C17orf98 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for C17orf98
- Invitrogen Antibodies for C17orf98 (AFLGC-C17orf98)
- Search GeneTex for Antibodies for C17orf98
Protein Products
-
OriGene Purified Proteins for C17orf98
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- Origene Custom Protein Services for C17orf98
- Novus Biologicals proteins for C17orf98
- Search GeneTex for Proteins for C17orf98
Assay Products
No data available for DME Specific Peptides for C17orf98 Gene
Domains & Families for C17orf98 Gene
Gene Families for C17orf98 Gene
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
Graphical View of Domain Structure for InterPro Entry
No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C17orf98 Gene
Function for C17orf98 Gene
Phenotypes From GWAS Catalog for C17orf98 Gene
Phenotypes for C17orf98 Gene
Animal Model Products
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-
CRISPR Products
-
OriGene CRISPR knockouts for C17orf98
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- genomics-online: gRNA clones - Search results for 17 available C17ORF98 gene related products
- Overview of 17 available C17ORF98 gene related products
- Applied Biological Materials CRISPR for C17orf98
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for C17orf98
- GenScript: Design CRISPR guide RNA sequences for C17orf98
miRNA for C17orf98 Gene
- miRTarBase miRNAs that target C17orf98
miRNA Products
Inhibitory RNA Products
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Clone Products
- Sino Biological Human cDNA Clone for C17orf98
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- Applied Biological Materials Clones for C17orf98
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for C17orf98
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C17orf98 Gene
Localization for C17orf98 Gene
| Compartment | Confidence |
|---|---|
| nucleus | 2 |
| cytosol | 2 |
| extracellular | 1 |
| mitochondrion | 1 |
- Intermediate filaments (2)
- Nucleoli (2)
No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for C17orf98 Gene
Transcripts for C17orf98 Gene
mRNA/cDNA for C17orf98 Gene
- (1) REFSEQ mRNAs :
- (0) Additional mRNA sequences :
- -
- (1) Selected AceView cDNA sequences:
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000614158 632 bps (uc002hqv.3)
Unigene Clusters for C17orf98 Gene
- Chromosome 17 open reading frame 98:
- Representative Sequences:
CRISPR Products
-
OriGene CRISPR knockouts for C17orf98
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for C17orf98
- genomics-online: gRNA clones - Search results for 17 available C17ORF98 gene related products
- Overview of 17 available C17ORF98 gene related products
- Applied Biological Materials CRISPR for C17orf98
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for C17orf98
- GenScript: Design CRISPR guide RNA sequences for C17orf98
miRNA Products
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for C17orf98
- Browse OriGene Inhibitory RNA Products For C17orf98
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C17orf98
- genomics-online: shRNA clones - Search results for 17 available C17ORF98 gene related products
- Overview of 17 available C17ORF98 gene related products
Clone Products
- Sino Biological Human cDNA Clone for C17orf98
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- Applied Biological Materials Clones for C17orf98
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for C17orf98 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
- Inner Cell Mass (Early Embryonic Tissues)
mRNA differential expression in normal tissues according to GTEx for C17orf98 Gene
This gene is overexpressed in Testis (x48.3).
NURSA nuclear receptor signaling pathways regulating expression of C17orf98 Gene:
C17orf98SOURCE GeneReport for Unigene cluster for C17orf98 Gene:
Hs.250182Primer Products
-
OriGene qPCR primer pairs for C17orf98
- genomics-online: primer clones - Search results for 17 available C17ORF98 gene related products
- Overview of 17 available C17ORF98 gene related products
Gene Expression Assay Products
No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C17orf98 Gene
Orthologs for C17orf98 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | C17H17orf98 33 |
|
||
| dog (Canis familiaris) |
Mammalia | C9H17orf98 33 |
|
||
| cow (Bos Taurus) |
Mammalia | C19H17orf98 33 |
|
||
| rat (Rattus norvegicus) |
Mammalia | LOC691189 33 |
|
||
| mouse (Mus musculus) |
Mammalia | 1700001P01Rik 16 33 |
|
||
| tropical clawed frog (Silurana tropicalis) |
Amphibia | LOC100494322 33 |
|
- Species where no ortholog for C17orf98 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for C17orf98 Gene
Pseudogenes.org Pseudogenes for C17orf98 Gene
No data available for Paralogs for C17orf98 Gene
Variants for C17orf98 Gene
| SNP ID | Clin | Chr 17 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000070303 | -- | 38,838,210(-) | A/G | intron_variant | |
| rs1000088122 | -- | 38,842,730(-) | C/T | upstream_transcript_variant | |
| rs1000470865 | -- | 38,838,140(-) | C/T | intron_variant | |
| rs1000501806 | -- | 38,837,925(-) | G/A | intron_variant | |
| rs1001001018 | -- | 38,839,850(-) | G/A | intron_variant |
Residual Variation Intolerance Score:
64.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
5.22;
69.93% of all genes are more intolerant (likely to be disease-causing)
Additional Variant Information for C17orf98 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- C17orf98
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C17orf98 Gene
Disorders for C17orf98 Gene
Additional Disease Information for C17orf98
No disorders were found for C17orf98 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C17orf98 Gene
Publications for C17orf98 Gene
- DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody MC … Nusbaum C (Nature 2006) 2 3 4 58
Products for C17orf98 Gene
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- OriGene Purified Proteins for C17orf98
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- Invitrogen Antibodies for C17orf98 (AFLGC-C17orf98)
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- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for C17orf98
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Sources for C17orf98 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
- (159) GlyConnect
- (160) Aminode
- (161) GeneCopoeia
- (162) GPS-Prot
- (163) RNACentral
- (164) LncRNADisease
- (165) LOVD
- (166) miR2Disease
- (167) DiseaseEnhancer
- (168) Boster Bio
- (169) Biorbyt