Aliases for C17orf77 Gene

Subcategory (RNA class) for C17orf77 Gene


Aliases for C17orf77 Gene

External Ids for C17orf77 Gene

Previous GeneCards Identifiers for C17orf77 Gene

  • GC17P070093
  • GC17P072581
  • GC17P067990
  • GC17P074586
  • GC17P074597
  • GC17P074609
  • GC17P074613

Summaries for C17orf77 Gene

GeneCards Summary for C17orf77 Gene

C17orf77 (Chromosome 17 Putative Open Reading Frame 77) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for C17orf77 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C17orf77 Gene

Genomics for C17orf77 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for C17orf77 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J074593 Promoter 0.4 EPDnew 0.4 +7.6 7609 0.1 SPI1 CD300LD C17orf77 ENSG00000261222 CD300E
GH17J074592 Promoter 0.4 Ensembl 0.4 +7.4 7423 0.2 SPI1 CD300LD SUMO2 C17orf77 piR-51845-001 CD300H
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C17orf77 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for C17orf77

Top Transcription factor binding sites by QIAGEN in the C17orf77 gene promoter:
  • AML1a
  • AREB6
  • Bach1
  • FOXF2
  • HNF-4alpha1
  • HNF-4alpha2
  • LCR-F1
  • SRF
  • SRF (504 AA)
  • USF1

Genomic Locations for C17orf77 Gene

Latest Assembly
9,532 bases
Plus strand

Previous Assembly
(GRCh37/hg19 by Entrez Gene)
9,531 bases
Plus strand

(GRCh37/hg19 by Ensembl)
9,531 bases
Plus strand

Genomic View for C17orf77 Gene

Genes around C17orf77 on UCSC Golden Path with GeneCards custom track
C17orf77 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
C17orf77 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C17orf77 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C17orf77 Gene

Proteins for C17orf77 Gene

  • Protein details for C17orf77 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein C17orf77
    Protein Accession:

    Protein attributes for C17orf77 Gene

    243 amino acids
    Molecular mass:
    26264 Da
    Quaternary structure:
    No Data Available
    • Sequence=AK056444; Type=Erroneous termination; Note=Truncated C-terminus.; Evidence={ECO:0000305};

neXtProt entry for C17orf77 Gene

Post-translational modifications for C17orf77 Gene

  • Glycosylation at Asn136
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for C17orf77 Gene

Domains & Families for C17orf77 Gene

Protein Domains for C17orf77 Gene

genes like me logo Genes that share domains with C17orf77: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C17orf77 Gene

Function for C17orf77 Gene

genes like me logo Genes that share phenotypes with C17orf77: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C17orf77 Gene

Localization for C17orf77 Gene

Subcellular locations from UniProtKB/Swiss-Prot for C17orf77 Gene


Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C17orf77 gene
Compartment Confidence
extracellular 3
cytosol 1
nucleus 0

Gene Ontology (GO) - Cellular Components for C17orf77 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with C17orf77: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for C17orf77 Gene

Pathways & Interactions for C17orf77 Gene

PathCards logo

SuperPathways for C17orf77 Gene

No Data Available

Gene Ontology (GO) - Biological Process for C17orf77 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C17orf77 Gene

Drugs & Compounds for C17orf77 Gene

No Compound Related Data Available

Transcripts for C17orf77 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for C17orf77 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007C141B_9606 lncRNA 641 3

Ensembl: ENST00000524389 (view in UCSC) ,

LncBook: HSALNT0245153,

LNCipedia: lnc-RAB37-2:1,

URS00007C0DD8_9606 lncRNA 2525 1

Ensembl: ENST00000392620 (view in UCSC) ,

URS0000A7F70E_9606 lncRNA 2470 1

Ensembl: ENST00000328023 (view in UCSC) ,

URS0001BD9EC8_9606 lncRNA 641 1

LncBook: HSALNT0245153,

C17orf77 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for C17orf77 Gene

2 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for C17orf77

Alternative Splicing Database (ASD) splice patterns (SP) for C17orf77 Gene

No ASD Table

Relevant External Links for C17orf77 Gene

GeneLoc Exon Structure for

Expression for C17orf77 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C17orf77 Gene

mRNA differential expression in normal tissues according to GTEx for C17orf77 Gene

This gene is overexpressed in Breast - Mammary Tissue (x26.1), Colon - Transverse (x11.2), Small Intestine - Terminal Ileum (x10.4), and Cervix - Ectocervix (x5.2).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C17orf77

SOURCE GeneReport for Unigene cluster for C17orf77 Gene:

genes like me logo Genes that share expression patterns with C17orf77: view

Primer products for research

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C17orf77 Gene

Orthologs for C17orf77 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C17orf77 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C17H17orf77 30
  • 98.12 (n)
C17orf77 31
  • 95 (a)
Species where no ortholog for C17orf77 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for C17orf77 Gene

Gene Tree for C17orf77 (if available)
Gene Tree for C17orf77 (if available)

Paralogs for C17orf77 Gene

No data available for Paralogs for C17orf77 Gene

Variants for C17orf77 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for C17orf77 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
rs493430 - p.Arg47Ser

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for C17orf77 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for C17orf77 Gene

Variant ID Type Subtype PubMed ID
dgv3282n100 CNV gain 25217958
dgv372n27 CNV gain 19166990
dgv5768n54 CNV gain 21841781
dgv5774n54 CNV gain 21841781
esv2751770 CNV gain 17911159
esv2761978 CNV gain 21179565
esv33995 CNV loss 17666407
esv3573820 CNV gain 25503493
esv3641230 CNV gain 21293372
esv3641244 CNV gain 21293372
nsv517569 CNV gain+loss 19592680

Variation tolerance for C17orf77 Gene

Residual Variation Intolerance Score: 94.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.14; 75.65% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C17orf77 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C17orf77 Gene

Disorders for C17orf77 Gene

Additional Disease Information for C17orf77

No disorders were found for C17orf77 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C17orf77 Gene

Publications for C17orf77 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody MC … Nusbaum C (Nature 2006) 4

Products for C17orf77 Gene

Sources for C17orf77 Gene