Aliases for C16orf97 Gene

Subcategory (RNA class) for C16orf97 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for C16orf97 Gene

  • Chromosome 16 Open Reading Frame 97 2 3 5
  • Uncharacterized Protein C16orf97 3 4
  • HSALNG0111439 167
  • NONHSAG019455 92
  • Lnc-TOX3-1 168

External Ids for C16orf97 Gene

Previous GeneCards Identifiers for C16orf97 Gene

  • GC16M052040

Summaries for C16orf97 Gene

GeneCards Summary for C16orf97 Gene

C16orf97 (Chromosome 16 Open Reading Frame 97) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with C16orf97 include Townes-Brocks Syndrome and Anus, Imperforate.

Additional gene information for C16orf97 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for C16orf97 Gene

Genomics for C16orf97 Gene

GeneHancer (GH) Regulatory Elements for C16orf97 Gene

Promoters and enhancers for C16orf97 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J052077 Enhancer 0.3 UCNEbase 500.7 +1.3 1282 0.3 C16orf97 ENSG00000261470 lnc-TOX3-10
GH16J052078 Enhancer 0.2 ENCODE 500.7 -0.3 -252 0.2 C16orf97 ENSG00000261470 ENSG00000279779
GH16J052069 Enhancer 0.4 Ensembl 23.3 +8.4 8432 0.6 CTCF SMC3 RAD21 ZNF654 HLF C16orf97 lnc-TOX3-10
GH16J052112 Enhancer 0.3 Ensembl 13 -35.5 -35469 2.4 FOS JUND C16orf97 LINC00919 piR-61532-115
GH16J052068 Enhancer 0.8 Ensembl ENCODE 0.4 +9.7 9747 0.4 EP300 CTCF RFX1 FOXA2 CEBPB SMC3 RAD21 SMAD4 ZNF654 SMARCA4 C16orf97 lnc-TOX3-10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around C16orf97 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for C16orf97

Genomic Locations for C16orf97 Gene

Genomic Locations for C16orf97 Gene
chr16:52,005,479-52,078,532
(GRCh38/hg38)
Size:
73,054 bases
Orientation:
Minus strand
chr16:52,039,399-52,112,386
(GRCh37/hg19)
Size:
72,988 bases
Orientation:
Minus strand

Genomic View for C16orf97 Gene

Genes around C16orf97 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C16orf97 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C16orf97 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C16orf97 Gene

Proteins for C16orf97 Gene

  • Protein details for C16orf97 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    H3BN30-CP097_HUMAN
    Recommended name:
    Uncharacterized protein C16orf97
    Protein Accession:
    H3BN30

    Protein attributes for C16orf97 Gene

    Size:
    126 amino acids
    Molecular mass:
    14216 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C16orf97 Gene

Post-translational modifications for C16orf97 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for C16orf97 Gene

No data available for DME Specific Peptides for C16orf97 Gene

Domains & Families for C16orf97 Gene

Protein Domains for C16orf97 Gene

ProtoNet:
genes like me logo Genes that share domains with C16orf97: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for C16orf97 Gene

Function for C16orf97 Gene

Phenotypes From GWAS Catalog for C16orf97 Gene

Phenotypes for C16orf97 Gene

genes like me logo Genes that share phenotypes with C16orf97: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for C16orf97 Gene

Localization for C16orf97 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C16orf97 Gene

Pathways & Interactions for C16orf97 Gene

PathCards logo

SuperPathways for C16orf97 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for C16orf97 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for C16orf97 Gene

Drugs & Compounds for C16orf97 Gene

No Compound Related Data Available

Transcripts for C16orf97 Gene

mRNA/cDNA for C16orf97 Gene

17 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
6 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
13 NONCODE transcripts :
11 LncBook transcripts :
13 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for C16orf97 Gene

No ASD Table

Relevant External Links for C16orf97 Gene

GeneLoc Exon Structure for
C16orf97

Expression for C16orf97 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for C16orf97 Gene

mRNA differential expression in normal tissues according to GTEx for C16orf97 Gene

This gene is overexpressed in Testis (x53.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for C16orf97 Gene



Transcriptomic regulation report from SPP (The Signaling Pathways Project) for C16orf97

SOURCE GeneReport for Unigene cluster for C16orf97 Gene:

Hs.534669
genes like me logo Genes that share expression patterns with C16orf97: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C16orf97 Gene

Orthologs for C16orf97 Gene

Evolution for C16orf97 Gene

ENSEMBL:
Gene Tree for C16orf97 (if available)
TreeFam:
Gene Tree for C16orf97 (if available)

No data available for Orthologs for C16orf97 Gene

Paralogs for C16orf97 Gene

No data available for Paralogs for C16orf97 Gene

Variants for C16orf97 Gene

Additional dbSNP identifiers (rs#s) for C16orf97 Gene

Structural Variations from Database of Genomic Variants (DGV) for C16orf97 Gene

Variant ID Type Subtype PubMed ID
esv34024 CNV loss 18971310
nsv1058257 CNV gain 25217958
nsv827650 CNV loss 20364138

Variation tolerance for C16orf97 Gene

Gene Damage Index Score: 1.69; 32.17% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C16orf97 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C16orf97

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for C16orf97 Gene

Disorders for C16orf97 Gene

MalaCards: The human disease database

(2) MalaCards diseases for C16orf97 Gene - From: DISEASES

Disorder Aliases PubMed IDs
townes-brocks syndrome
  • renal-ear-anal-radial syndrome
anus, imperforate
  • imperforate anus
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for C16orf97

genes like me logo Genes that share disorders with C16orf97: view

No data available for UniProtKB/Swiss-Prot and Genatlas for C16orf97 Gene

Publications for C16orf97 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 4 54
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 54

Products for C16orf97 Gene

Sources for C16orf97 Gene