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Aliases for C15orf56 Gene

Aliases for C15orf56 Gene

  • Chromosome 15 Open Reading Frame 56 2 3 5

External Ids for C15orf56 Gene

Previous GeneCards Identifiers for C15orf56 Gene

  • GC15M038332
  • GC15M040542
  • GC15M017385

Summaries for C15orf56 Gene

GeneCards Summary for C15orf56 Gene

C15orf56 (Chromosome 15 Open Reading Frame 56) is a Protein Coding gene.

Additional gene information for C15orf56 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for C15orf56 Gene

Genomics for C15orf56 Gene

GeneHancer (GH) Regulatory Elements for C15orf56 Gene

Promoters and enhancers for C15orf56 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I040251 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 560 +0.5 471 2.2 USF1 POLR2A BACH1 ZFX EZH2 EGR2 C15orf56 PAK6 ENSG00000279537 BUB1B-PAK6
GH15I040090 Promoter/Enhancer 3.3 VISTA EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.1 +152.6 152611 18.8 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 BMF ENSG00000259211 DNAJC17 RAD51-AS1 BAHD1 CHST14 EIF2AK4 SRP14-AS1 ENSG00000259536 PLCB2
GH15I040326 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 10.5 -88.1 -88095 28.7 PKNOX1 FOXA2 ZFP64 ARID4B SIN3A FEZF1 DMAP1 SLC30A9 ZNF766 CBX5 CCDC9B PHGR1 KNSTRN DISP2 IVD ANKRD63 RPLP0P10 PLCB2 C15orf56 PAK6
GH15I040322 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 10.7 -70.7 -70730 3.3 PKNOX1 ARID4B SIN3A YY1 SLC30A9 ZNF766 ZNF213 E2F8 ZNF143 SP3 INAFM2 KNSTRN INO80 ENSG00000259211 BAHD1 DNAJC17 ANKRD63 DISP2 ENSG00000259198 C15orf56
GH15I040044 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +202.6 202553 12.1 HDGF PKNOX1 FOXA2 SMAD1 ARID4B SIN3A IRF4 YY1 CBX5 ZNF207 BMF DNAJC17 ENSG00000259211 PLCB2 EIF2AK4 SRP14 RAD51-AS1 CHST14 PAK6 ANKRD63
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around C15orf56 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the C15orf56 gene promoter:

Genomic Locations for C15orf56 Gene

Genomic Locations for C15orf56 Gene
chr15:40,250,664-40,252,969
(GRCh38/hg38)
Size:
2,306 bases
Orientation:
Minus strand
chr15:40,542,865-40,545,170
(GRCh37/hg19)

Genomic View for C15orf56 Gene

Genes around C15orf56 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
C15orf56 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for C15orf56 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for C15orf56 Gene

Proteins for C15orf56 Gene

  • Protein details for C15orf56 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N910-CO056_HUMAN
    Recommended name:
    Putative uncharacterized protein C15orf56
    Protein Accession:
    Q8N910

    Protein attributes for C15orf56 Gene

    Size:
    161 amino acids
    Molecular mass:
    17040 Da
    Quaternary structure:
    No Data Available

neXtProt entry for C15orf56 Gene

Post-translational modifications for C15orf56 Gene

No Post-translational modifications

Other Protein References for C15orf56 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for C15orf56 Gene

Domains & Families for C15orf56 Gene

Protein Domains for C15orf56 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with C15orf56: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for C15orf56 Gene

Function for C15orf56 Gene

Phenotypes From GWAS Catalog for C15orf56 Gene

genes like me logo Genes that share phenotypes with C15orf56: view

miRNA for C15orf56 Gene

miRTarBase miRNAs that target C15orf56

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for C15orf56 Gene

Localization for C15orf56 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for C15orf56 gene
Compartment Confidence
mitochondrion 2
nucleus 2
cytosol 2
extracellular 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for C15orf56 Gene

Pathways & Interactions for C15orf56 Gene

SuperPathways for C15orf56 Gene

No Data Available

Interacting Proteins for C15orf56 Gene

Gene Ontology (GO) - Biological Process for C15orf56 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for C15orf56 Gene

Drugs & Compounds for C15orf56 Gene

No Compound Related Data Available

Transcripts for C15orf56 Gene

mRNA/cDNA for C15orf56 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for C15orf56 Gene

Chromosome 15 open reading frame 56:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for C15orf56 Gene

No ASD Table

Relevant External Links for C15orf56 Gene

GeneLoc Exon Structure for
C15orf56
ECgene alternative splicing isoforms for
C15orf56

Expression for C15orf56 Gene

NURSA nuclear receptor signaling pathways regulating expression of C15orf56 Gene:

C15orf56

SOURCE GeneReport for Unigene cluster for C15orf56 Gene:

Hs.631718
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for C15orf56 Gene

Orthologs for C15orf56 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for C15orf56 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C15H15orf56 33
  • 99.17 (n)
C15orf56 34
  • 98 (a)
OneToOne
Species where no ortholog for C15orf56 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for C15orf56 Gene

ENSEMBL:
Gene Tree for C15orf56 (if available)
TreeFam:
Gene Tree for C15orf56 (if available)

Paralogs for C15orf56 Gene

No data available for Paralogs for C15orf56 Gene

Variants for C15orf56 Gene

Sequence variations from dbSNP and Humsavar for C15orf56 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000118026 -- 40,250,372(-) C/T downstream_transcript_variant
rs1000447767 -- 40,251,297(-) C/G/T 3_prime_UTR_variant
rs1000631231 -- 40,251,606(-) T/C 3_prime_UTR_variant
rs1001237608 -- 40,253,014(-) C/G/T upstream_transcript_variant
rs1001725686 -- 40,251,114(-) G/T 3_prime_UTR_variant

Structural Variations from Database of Genomic Variants (DGV) for C15orf56 Gene

Variant ID Type Subtype PubMed ID
nsv471240 CNV loss 18288195
nsv952611 CNV deletion 24416366

Variation tolerance for C15orf56 Gene

Gene Damage Index Score: 5.98; 74.74% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for C15orf56 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
C15orf56

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for C15orf56 Gene

Disorders for C15orf56 Gene

Additional Disease Information for C15orf56

No disorders were found for C15orf56 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for C15orf56 Gene

Publications for C15orf56 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for C15orf56 Gene

Sources for C15orf56 Gene

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